Detailed information of evm.model.contig_81117.1 in Platygyra sinensis

Genomic Location: contig_81117:1090...5488
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01585
all species →		G-patchG-patch domainFamilyInterproscan
PF06220
all species →		zf-U1U1 zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036236
all species →		Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR003604
all species →		DomainMatrin/U1-C-like, C2H2-type zinc fingerInterproscan
IPR017340
all species →		FamilyU1 small nuclear ribonucleoprotein CInterproscan
IPR000690
all species →		DomainMatrin/U1-C, C2H2-type zinc fingerInterproscan
IPR000467
all species →		DomainG-patch domainInterproscan
IPR013085
all species →		DomainU1-C, C2H2-type zinc fingerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31148
all species →		U1 SMALL NUCLEAR RIBONUCLEOPROTEIN CInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0000387
all species →		Biological Processspliceosomal snRNP assemblyInterproscan
GO:0000395
all species →		Biological ProcessmRNA 5'-splice site recognitionInterproscan
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005685
all species →		Cellular ComponentU1 snRNPInterproscan
GO:0030627
all species →		Molecular Functionpre-mRNA 5'-splice site bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.contig_81117.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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