Gene detail

Detailed information of evm.model.contig_81552.1 in Platygyra sinensis

Genomic Location: contig_81552:6314...13903
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_81552.1

ATGTCTTGGAATATCCAAAGACCTGACGGTGTCGGCGGAATGGCACCCTCGGAAGGGCAGCCGTACATGAGCCACGAACAACTTCTCAGTAACAGAGACGCTCTCGAGCGCAAGCTCTCTCAAAGGCGACCTCGTCAAGAGCTCGTAAACAGGGGAATCATGCCAGCGGTCAGTGCAGCACCAGGTATTCTTTCTCAAAGGACGAAACTCGAACGAGCGAAGACTGGCGATATGTTGCAAAAGAAGATAAGAGCAAGACCTAACCGAGCTCAGCTGATTCAAAGACACATTTTGAAAGAAACACCTGGTGCTGTGGATCCTTCATTGATTGACAAACAGATGAGATTGAAAAGGAAGAAACTAGAAGACAACCTCAATGACAAATTGTTGTTTAGACCTGGGCCTCTGGAACTAGTAAAGGAGAATATTTTGGAAGCTGGAACTCCAATTAGCCAGGTGGTACAAGAGGGAACAGTGCCATTTACTGACACAACAGATTACTTTGATTCTTTTTCTCCTGAGAGTATTGACTCGCCAGAACCAGCTCCTTCACCAGAACCAAGCCAAGTTGCTTCTCCACCAAGCATTGCATCCTCACCAGGATCAACATGCATCACATCAACAGTGCAAGCCCTTGCTTCTCTGCAAGCGCAGACTCGAAAGCATTCACAGCAACAACAGGAAAAACAACAGCAGCAACATCAGATGTTTCTTCAACAGCAAAATAACCAGCAGCTTCTAACATCACCTTCACCTCTCTCAGCATCAGTACAATCATTACAAGGATCAAAAAAGGAAGGCAAGTCTCGCAAGAAGACAACCAAACCCAAAGTTAAGAAGTACAAGTATCATGAGTACAGGCCACCCAATGGTGAGGTGCAGAAGTCTGATTTACCGTCAGACTCCCCTTACGGCTTGTTGTTGCAACAACAACAGCTGTACCTCCAGTTGCAGGTATTGTACCAGAACTACCCACATCATTGTATGTTACCATCCATTCCAGAGAATGTTAAACTTGGAGTGAATGGTTCCAAGAATAATAATGGTGCTGATTCTGAAAAAGCTGTCAAAATCGAGGACATGAGAGTTGTTGATATGAGAAGAGCTCTGAAAGAGCGTGGGCTTCCAGTGTTTGGTTCTAAAACTGATTTAATTAAGCGACTGAAGGAGGCTGGACCTCTTGTGACACCAGCTGTGTCAAGCTCAAGCACTGCACCTGTTGTAGTCTCTACACAAGGACAAATAACAACATCAGCTCCAAGCATGTCCCAGGCACAAGTTCTTCCAACACAAACAGGCCATCAAACACTACATCGGTCCCATTCATTGCCGTTGCAAAATGCAAATTTTAACACTGTGGAGCAGTTGAAGATGCAGATTTTGGCAAATAATCAAAGTCTCCAGCAGCTTAGTGTCCCACCAGAGGTTCAGCAGCAGCTGCAGCAGCTCCAGTATTTGAACCTTCAGTTGCAACTTCAACACTTGAACATCCAGCAACAACAGAACATACAACCAAAACCTCAAGACACCCCAGTTAGCAGTGAGACTGTAGCTGTCAAAAAGGAAAGTATTACAGATAGTAATTGTTCTTTCAGTCGGTCCCCTGATCAGAAACAAATAAAGGACCAAAAGCCTTCATTCATGTTACAACAACAAAGTCAGCACTCGCAAATGTCACCAGGGAGTCATTCCCTTTTGCTGTCCCAGCAGTCTCAGAAGCCGCAGCAAGTAGATCATGTTGATCAGGCTTTGGCTCATTTAAAGGAAGAGGCTCAAACTCTGGACTTTCGCTCACCTCACATTGACTCTAATCCTAGCAGTGTCGAAAGCCAGATTCTGTCTTGGGATCAACAACATCCACTGTTTGATGGTGAAAGTGAATCTTATCCATCTCCAGGCTCTCAGCATTCAGATTTGTCAAGTCTGTCACCATTGCAAATGGACCATCTTTCCCATAGTATGGAAGCTTTACATAGCACAAACCTATTTCAGGGCAGTGCAAAGCCCGATAATCACCAAATGCAGAGGTCATACTCGGAGAGGTCACCGTCTGATGATTGTGATGATTACTTCTTAATGGTTCCACAGACTAAGCCTCGATCATTGTCTGAGCCACAGTTCCCAGTTTCAACACACAAGCGATCCTCATCATTCCCTTCGATCCCCTTCACCACTCCCCCACCGAGCTACGAGGCTCACATGGCTGCACAGTCACAAAAGCAGCAAAGAACCATTCCTGTGAGTGGACAGATGGGTGGTGGCTTTACTGTGACCAATGACATGAGTCCTAAACACGAGGACATGGATTTGCCTCTGGAATCTGTAATCCAGGACAAGGAATTATCTCAGGAATTACACAAGGCCATGACAAATTTTAGTTCACTTGATCATGACGAAATACTTGAAATACTAGGAGAGCCCCGCACTCGAATGCCAACAACTACTAGTTCATTTACTGGAGTGATGTCATCTTCACAATTATCTCCTGGGAACTCTCAGACACTGAGCAAGTCACCAAATTTTGGATACCTTCGCACTCTGCCGACCCCGAACTCACCAGGAAGGATGTCAAGAAGTTGTGAAGATGTGAGCCAATTGCCTGTTGGCAACAAATTTCCTCTTCAAATGGACAACAATACTTTGTCTGATTTTGACCATTTGCTCATGAGCCCTTTGTCTCCCATGAAAGTGGACTCTTCTGATACAGATGACAATTCAAGCTTAATGTATCCCTCATCTAATTCTATACCAATTCCAACATCAAGCGTTGGAAGGACGCCTAATTTAAGCTGGCTTGACTTGAGTTTGTCACCATCGTCCCAGAATATTTCACCTCATGCAAATGTTGAACTGCATAATAACAACAACAAAGGGACTCCACCCACGTTTTTGTATGACCCTACTACTGTATTCAAGAGTGATGAACCTTTTCCGTTGTCACTGTTTGACTTAGAGACACCAACAGCTCTTCATCCGCCCTCTGATTTTTCAGAAGCGATGGATTACTGCGTTTAG

Transcript

evm.model.contig_81552.1

ATGTCTTGGAATATCCAAAGACCTGACGGTGTCGGCGGAATGGCACCCTCGGAAGGGCAGCCGTACATGAGCCACGAACAACTTCTCAGTAACAGAGACGCTCTCGAGCGCAAGCTCTCTCAAAGGCGACCTCGTCAAGAGCTCGTAAACAGGGGAATCATGCCAGCGGTCAGTGCAGCACCAGGTATTCTTTCTCAAAGGACGAAACTCGAACGAGCGAAGACTGGCGATATGTTGCAAAAGAAGATAAGAGCAAGACCTAACCGAGCTCAGCTGATTCAAAGACACATTTTGAAAGAAACACCTGGTGCTGTGGATCCTTCATTGATTGACAAACAGATGAGATTGAAAAGGAAGAAACTAGAAGACAACCTCAATGACAAATTGTTGTTTAGACCTGGGCCTCTGGAACTAGTAAAGGAGAATATTTTGGAAGCTGGAACTCCAATTAGCCAGGTGGTACAAGAGGGAACAGTGCCATTTACTGACACAACAGATTACTTTGATTCTTTTTCTCCTGAGAGTATTGACTCGCCAGAACCAGCTCCTTCACCAGAACCAAGCCAAGTTGCTTCTCCACCAAGCATTGCATCCTCACCAGGATCAACATGCATCACATCAACAGTGCAAGCCCTTGCTTCTCTGCAAGCGCAGACTCGAAAGCATTCACAGCAACAACAGgaaaaacaacagcagcaacatcAGATGTTTCTTCAACAGCAAAATAACCAGCAGCTTCTAACATCACCTTCACCTCTCTCAGCATCAGTACAATCATTACAAGGATCAAAAAAGGAAGGCAAGTCTCGCAAGAAGACAACCAAACCCAAAGTTAAGAAGTACAAGTATCATGAGTACAGGCCACCCAATGGTGAGGTGCAGAAGTCTGATTTACCGTCAGACTCCCCTTACGGCTTGTTgttgcaacaacaacagctgtACCTCCAGTTGCAGGTATTGTACCAGAACTACCCACATCATTGTATGTTACCATCCATTCCAGAGAATGTTAAACTTGGAGTGAATGGTTCCAAGAATAATAATGGTGCTGATTCTGAAAAAGCTGTCAAAATCGAGGACATGAGAGTTGTTGATATGAGAAGAGCTCTGAAAGAGCGTGGGCTTCCAGTGTTTGGttctaaaactgatttaattaaGCGACTGAAGGAGGCTGGACCTCTTGTGACACCAGCTGTGTCAAGCTCAAGCACTGCACCTGTTGTAGTCTCTACACAAGGACAAATAACAACATCAGCTCCAAGCATGTCCCAGGCACAAGTTCTTCCAACACAAACAGGCCATCAAACACTACATCGGTCCCATTCATTGCcgttgcaaaatgcaaattttaacaCTGTGGAGCAGTTGAAGATGCAGATTTTGGCAAATAATCAAAGTCTCCAGCAGCTTAGTGTCCCACCAGAGGTTCAGCAGCAGCTGCAGCAGCTCCAGTATTTGAACCTTCAGTTGCAACTTCAACACTTGAACATCCAGCAACAACAGAACATACAACCAAAACCTCAAGACACCCCAGTTAGCAGTGAGACTGTAGCTGTCAAAAAGGAAAGTATTACAGATAGTAATTGTTCTTTCAGTCGGTCCCCTGATCAGAAACAAATAAAGGACCAAAAGCCTTCATTCATGTTACAACAACAAAGTCAGCACTCGCAAATGTCACCAGGGAGTCATTCCCTTTTGCTGTCCCAGCAGTCTCAGAAGCCGCAGCAAGTAGATCATGTTGATCAGGCTTTGGCTCATTTAAAGGAAGAGGCTCAAACTCTGGACTTTCGCTCACCTCACATTGACTCTAATCCTAGCAGTGTCGAAAGCCAGATTCTGTCTTGGGATCAACAACATCCACTGTTTGATGGTGAAAGTGAATCTTATCCATCTCCAGGCTCTCAGCATTCAGATTTGTCAAGTCTGTCACCATTGCAAATGGACCATCTTTCCCATAGTATGGAAGCTTTACATAGCACAAACCTATTTCAGGGCAGTGCAAAGCCCGATAATCACCAAATGCAGAGGTCATACTCGGAGAGGTCACCGTCTGATGATTGTGATGATTACTTCTTAATGGTTCCACAGACTAAGCCTCGATCATTGTCTGAGCCACAGTTCCCAGTTTCAACACACAAGCGATCCTCATCATTCCCTTCGATCCCCTTCACCACTCCCCCACCGAGCTACGAGGCTCACATGGCTGCACAGTCACAAAAGCAGCAAAGAACCATTCCTGTGAGTGGACAGATGGGTGGTGGCTTTACTGTGACCAATGACATGAGTCCTAAACACGAGGACATGGATTTGCCTCTGGAATCTGTAATCCAGGACAAGGAATTATCTCAGGAATTACACAAGgcCATGACAAATTTTAGTTCACTTGATCATGACGAAATACTTGAAATACTAGGAGagcCCCGCACTCGAATGCCAACAACTACTAGTTCATTTACTGGAGTGATGTCATCTTCACAATTATCTCCTGGGAACTCTCAGACACTGAGCAAGTCACCAAATTTTGGATACCTTCGCACTCTGCCGACCCCGAACTCACCAGGAAGGATGTCAAGAAGTTGTGAAGATGTGAGCCAATTGCCTGTTGGCAACAAATTTCCTCTTCAAATGGACAACAATACTTTGTCTGATTTTGACCATTTGCTCATGAGCCCTTTGTCTCCCATGAAAGTGGACTCTTCTGATACAGATGACAATTCAAGCTTAATGTATCCCTCATCTAATTCTATACCAATTCCAACATCAAGCGTTGGAAGGACGCCTAATTTAAGCTGGCTTGACTTGAGTTTGTCACCATCGTCCCAGAATATTTCACCTCATGCAAATGTTGAACTgcataataacaacaacaaagggACTCCACCCACGTTTTTGTATGACCCTACTACTGTATTCAAGAGTGATGAACCTTTTCCGTTGTCACTGTTTGACTTAGAGACACCAACAGCTCTTCATCCGCCCTCTGATTTTTCAGAAGCGATGGATTACTGCGTTTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02755 all species →	RPEL	RPEL repeat	Disordered	Interproscan
PF02037 all species →	SAP	SAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR043451 all species →	Family	Myocardin-like	Interproscan
IPR004018 all species →	Repeat	RPEL repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22793 all species →	MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22525	MKL; MKL/myocardin-like protein	-	Transcription	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.