Gene detail

Detailed information of evm.model.contig_81751.2 in Platygyra sinensis

Genomic Location: contig_81751:3291...21742
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_81751.2

ATGAAAAGTCTCTCAGAAAAAAGCGACGGGGACGAGGACGAAGACGAAGAAGACGACGAAGGTGAAGAGGAAGACGAAGGTCGGCCGGACGATGTGAACGACATCATAAATGACGAAGAAGAAGAAATCGCTGGAGACGAAGAAGAGTCTCATCACGGGCATCATCATAGAAAACGTAGAAAGGATGAGGCCGAAGAACTGTACGAAGAAGATTTGTCTTTGATCGAGGAGAACTTAGGCATTCGTTTACATTGGAAAAAACCTCGTTTAAAGAAATTGCCGGATTCTGATGAAGATAGAAATCTACTAGGGTTCTATCCTGAATGCTGTTCTCTGATTGGCTACATTACTCCTGATAATGATGTGGATGATTTCATCGTGGATGATGAAGGGAACCCTATCAATAAACATTCCAAGAAAAAGCGAAGACTTCCTGGAACAGTGCAAGACTCTGCTCTTATGGAAGCTCAAGATATCTTTGGTCTTGACTTTGATTTTGACGAATTTGAGAAGTATGGAAGAGATGATTTCTTGTCAGAAGATGATGAGGATGAATATGAAGAAGAGGATGAAGAAGATGGTGCATTAAGAAGACCAAAAAAGAAGTCAACCAAGAAATCCATTTATGAAGTGTTTGAACCAAGTGAGCTTGAGAAAGGAATGTTAACCAACAAAGACAATGAAATTAGAACTTCAGATATTCCTGAAAGATTTCAGGTGCGTGATTTTCCTGTGAAGTCAACAAAAGAAGGAGAGCTAGATAAGGAAGCCAAGTGGATTTACAAACATGCATTCCTGGATGTGCCAATATCTCACCAGGATCGTCTTGATGGTGATATCCACTCTCACTCCAGAACACCCAAAGCATACAGTAACGATGAGGAGAGAAAGGAGGCTTTTGTTAGCAAAATCAGGGAAGCTTTGAACCTCATGAGGAACCAACTCTTTGAGGTTCCATTCATTGCTAACTATAGAAAAGAGTACATTGAGCCTGAACTAAATATCGAAGACCTGTGGAAAATCTGGGAATGGGATGAAAAGTGGTGCCAGCTTCACACTCGCAAAGAGAATCTCCATCGTCTGTTTCAAGAAATGCAGGATTACCAGTTTAACAAGATCCAAGAGAGTGGTGATCAGCCTCTTGATGATGATACAAGAATTTTGCAGGCAGAGGATATTGACAGGCTAGATGAAGTTGAGACCATGGAACAACTAAAAGATGTGTACAGCCATTTTATGCTGTACTACAAAAATGATATCCCTGCCATGTGGGAAGCCAAGAGGAAAAAGAGTCAATCAGCAGAGGGTGGGGATGATGGTGAAGCAAAAGTCTCACCACAAAAACAGAAAATGCCAGCAAAGCGTGATCTTTTCACTATCTGTAGACAAGCAGGTGTTAGTGGTTTGGCCAGAAAGTTTGGCTTAACTCCGGATCAGTTTGGAGAGAACTTGCGCGACAACTACCAGAGACACGAAACTCAGCAGCATCCTCTTGAACCCGAAAACACTGCTGAGAATTACCTTAGCAGAGAAAATTACTGCGAGAGCAGCGATGGCATGCACATGTTCTTGTTCACTGAAAGCCCGATTGAGTGGAGGAGATGGTTCAAGAAAAGGCAAACCATCGAAAATATATATAGATCTCTTGTAACCTTACTTCAAAAGGAAATGCAAATAAAAATTATTGTTACAAGTCTGGACCTCGCCAAATTGATGAAGGCTGGTTGGTGTGTGGACAAGAAAGGGAAATCATACGTCTTTGTCTCCCCTTCTCCCGAAGAATGGAGATTCAAATCCTCAAAAGATGTGATGACATACCTCCAAAATAGGAACGATTATAGCTTATATTCTCACTGTCATTGCCAAGCTGCAGCTGCAATATGGAGCGCCGGAGAGGAAAGCAGCGATACAGAAAATGAGGAATATCAACCAGATACGGGAGAAGAAACTGGAGTTTCTAGCGCGTATGATGATACGCCTATGAAAGCAGGAATGTCAGGACAAGCATTGGAACCAACACCAAAAAGGTAA

Transcript

evm.model.contig_81751.2

ATGAAAAGTCTCTCAGAAAAAAGCGACGGGGACGAGGACGAAGACGAAGAAGACGACGAAGGTGAAGAGGAAGACGAAGGTCGGCCGGACGATGTGAACGACATCATAaatgacgaagaagaagaaatcgCTGGAGACGAAGAAGAGTCTCATCACGGGCATCATCATAGAAAACGTAGAAAGGATGAGGCCGAAGAACTGTACGAAGAAGATTTGTCTTTGATCGAGGAGAACTTAGGCATTCGTTTACATTGGaaAAAACCTCGTTTAAAGAAATTGCCGGATTCTGATGAAGATAGAAATCTACTAGGGTTCTATCctgaatgctgttctctgattggctacattacTCCTGATAatGATGTGGATGATTTCATCGTGGATGATGAAGGGAACCCTATCAATAAACATTCCAAGAAAAAGCGAAGACTTCCTGGAACAGTGCAAGACTCTGCTCTTATGGAAGCTCAAGATATCTTTGGTCTTGACTTTGATTTTGACGAATTTGAGAAGTATGGAAGAGATGATTTCTTGTCAGAAGATGATGAGGATGAATATGAAGAAGAGGATGAAGAAGATGGTGCATTAAGAAGACCAAAAAAGAAGTCAACCAAGAAATCCATTTATGAAGTGTTTGAACCAAGTGAGCTTGAGAAAGGAATGTTAACCAACAAAGACAATGAAATTAGAACTTCAGATATTCCTGAAAGATTTCAGGTGCGTGATTTTCCTGTGAAGTCAACAAAAGAAGGAGAGCTAGATAAGGAAGCCAAGTGGATTTACAAACATGCATTCCTGGATGTGCCAATATCTCACCAGGATCGTCTTGATGGTGATATCCACTCTCACTCCAGAACACCCAAAGCATACAGTAACGATGAGGAGAGAAAGGAGGCTTTTGTTAGCAAAATCAGGGAAGCTTTGAACCTCATGAGGAACCAACTCTTTGAGGTTCCATTCATTGCTAACTATAGAAAAGAGTACATTGAGCCTGAACTAAATATCGAAGACCTGTGGAAAATCTGGGAATGGGATGAAAAGTGGTGCCAGCTTCACACTCGCAAAGAGAATCTCCATCGTCTGTTTCAAGAAATGCAGGATTACCAGTTTAACAAGATCCAAGAGAGTGGTGATCAGCCTCTTGATGATGATACAAGAATTTTGCAGGCAGAGGATATTGACAGGCTAGATGAAGTTGAGACCATGGAACAACTAAAAGATGTGTACAGCCATTTTATGCTGTACTACAAAAATGATATCCCTGCCATGTGGGAAGCCAAGAGGAAAAAGAGTCAATCAGCAGAGGGTGGGGATGATGGTGAAGCAAAAGTCTCACCACAAAAACAGAAAATGCCAGCAAAGCGTGATCTTTTCACTATCTGTAGACAAGCAGGTGTTAGTGGTTTGGCCAGAAAGTTTGGCTTAACTCCGGATCAGTTTGGAGAGAACTTGCGCGACAACTACCAGAGACACGAAACTCAGCAGCATCCTCTTGAACCCGAAAACACTGCTGAGAATTACCTTAGCAGAGAAAATTACTGCGAGAGCAGCGATGGCATGCACATGTTCTTGTTCACTGAAAGCCCGATTGAGTGGAGGAGATGGTTCAAGAAAAGGCAAACCAtcgaaaatatatatagatctcttgtaaccttacttcaaaaggaaatgcaaataaaaattattgttacaaGTCTGGACCTCGCCAAATTGATGAAGGCTGGTTGGTGTGTGGACAAGAAAGGGAAATCATACGTCTTTGTCTCCCCTTCTCCCGAAGAATGGAGATTCAAATCCTCAAAAGATGTGATGACATACCTCCAAAATAGGAACGATTATAGCTTATATTCTCACTGTCATTGCCAAGCTGCAGCTGCAATATGGAGCGCCGGAGAGGAAAGCAGCGATACAGAAAATGAGGAATATCAACCAGATACGGGAGAAGAAACTGGAGTTTCTAGCGCGTATGATGATACGCCTATGAAAGCAGGAATGTCAGGACAAGCATTGGAACCAACACCAAAAAGGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14641 all species →	HTH_44	Helix-turn-helix DNA-binding domain of SPT6	Domain	Interproscan
PF14632 all species →	SPT6_acidic	Acidic N-terminal SPT6	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028088 all species →	Domain	Helix-turn-helix DNA-binding domain of Spt6	Interproscan
IPR023323 all species →	Homologous_superfamily	Tex-like domain superfamily	Interproscan
IPR028083 all species →	Domain	Spt6 acidic, N-terminal domain	Interproscan
IPR023319 all species →	Homologous_superfamily	Tex-like protein, HTH domain superfamily	Interproscan
IPR017072 all species →	Family	Transcription elongation factor Spt6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10145 all species →	TRANSCRIPTION ELONGATION FACTOR SPT6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0008023 all species →	Cellular Component	transcription elongation factor complex	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0034728 all species →	Biological Process	nucleosome organization	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0140673 all species →	Biological Process	transcription elongation-coupled chromatin remodeling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_81751.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.