Gene detail

Detailed information of evm.model.contig_82357.3 in Platygyra sinensis

Genomic Location: contig_82357:7220...16432
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_82357.3

ATGGACAGAAAACCAGGGCATTTGACCAAGTCTGTTCAAGAGATTGCTGGATCTTTGTTCTGGATAAAGGTTGTTGGAATTGGAAATGATGGTGTAGGAAAGACCTGTCTTGTTAAAAACTTTTGTGAGAAAAAATTTTCAAAGAGCTATCACCCTACAACAGGAGTTGATTATGGTTTCAAGTTACACAAAATTAATGGCACTGACTATAGAATTAACTTCTGGGATTTTGGTGGTCATACAGATTATGATGAAATAAGAGTGGAACTCTATGGACAGACACAGGCTTGTATTGTGGTGTTTGATGTTACAAACAAGTTGTCATTTGAATCCCTGGACTACTGGTTACAAGAGTTCACCAGTAATGGCGGAAAACAAGCCGTTATGGCTGTGGTGGCTAATAAGCCGCTGCAGATTCTCAGGATTGTAAACTTGTTTTACAAAAGTTTTGAAAACTGTCCAGTAGCTAGAGTTAAAAGTGACCAGAGCCTTATACCAACTCATCATAATAGGCCAGCTGGATTTGAAAGTACAACTGGCGCCATTTTAGAGCTTTACCTTTATCCAGAACAAAGATCCAGCAATCTCTTGAACAGACTTGGTCAAATGCCCTGGTTTTCTGTCCATCGCCACATTATATCTCTCTCTTCAATACTGTCAACAAACTTGTTACTGCTTTTGCAACCGCGCTTGTGTGGTCACCTGGTTACCAAGCATCCAAAGTTCAAAATGGCGGAGTTTGCAGCTCATTTGAACCAAGGGACTACAAATGCCAACCCTACGATATTCGAGATAGTCGCCGAGGAATCTATGGCATCAGTTTTTAGACCGGCAATTTCTTATGCGTTAAAGGTGCTGGCAAGTTCTAATCCTGGAAGATGGGGCTGGATTTGGCGTTTCGGAGACGAACTTCACCTCTGTTTAGATTATATCGTTCAGAATTACTACTTGAAGAACTTTGGAGGTTCAATATCTGAACATTTTTACGGTCTTAAAAGAGTTAACAGACTTAATACCGAAAAAGACGAGGGAGAGCTTTCAAGTTATCAGAAGTACCTATCTGTGATGATGCTTGTCGGAGTACCATACGCAAAGCTGAAACTTGATCAACTGTTTGAAAGAGTGAAAGAAGAGTATGTTAGCGGATATTTGTCCTCTAACTCGCCACGAAAGAATTCTTATTTTGTTCACCTGAAGAGAATATTTATTTATGTGTACCCATTCTTACATTTCTCTTGGGAAACGATCTTCTTATGTTATCACTTACTGTACATCTTCAGATTCTCTGGAGTCCATTCCCCTCTCCTACATGCTATTGGAGTCTCGCTCCAAAGACTCACGAGACAAGATATTCTTGCGCACAACTTACAGAACAGTCTGCCCAACATAATGAGTGGAAGGACTGTGGCTGAAACGATATTGGCAATTCCAAGCTCAGTGACACAGTTACTAGCATCAGTTTTTGCCAATGGTCTTCCGGTTGTGGTGTTCTTTCTCAAATTCATAGATTGGTGGTATTCAAGTGACAATAAAGGTGCAGTGCAGTCTGTGATGCAGTTACCAGTTCCTCCACCACCACCTCAACCTAAGTCACATATCCTTGTTCGTTGCACCCTTAACAAACCTTGTTGCTTTGTGGATAAATGGCCAATTCCCTCTATGAAACGTACCTCTGTGGGACGTACCTCTATGGGACTTGCCTCTAAGGGACATACCTCTATGGGACATACCTCTGTGGACATACCTCTATGGGACATACCTCTGTGGGACGTACCTCTAAGGGTCATACCTCTGTGGGGCGTACCTCTACGGGACATACCTCTGTGGGACATACTTCTAAGAGACATACCTCTAAGGGACATACCTCTATGGGACATACCTCTGTGGGACATACCTCTATGGGACATACCTCTAAGGGACATACCTCTATGGGACATACCTCTAAGGGATATACCTGCAGGGAATCGTGTTGTATTCAGCATCATCTTGGACTGGATATTGGTTTTGATGAATACACCTACCACGATTCCCTGCAGGCCTATGCCAGAGGGAGCTGGCAATTGA

Transcript

evm.model.contig_82357.3

ATGGACAGAAAACCAGGGCATTTGACCAAGTCTGTTCAAGAGATTGCTGGATCTTTGTTCTGGATAAAGGTTGTTGGAATTGGAAATGATGGTGTAGGAAAGACCTGTCTTGTTAAAAACTTTTGTGAGAAAAAATTTTCAAAGAGCTATCACCCTACAACAGGAGTTGATTATGGTTTCAAGTTACACAAAATTAATGGCACTGACTATAGAATTAACTTCTGGGATTTTGGTGGTCATACAGATTATGATGAAATAAGAGTGGAACTCTATGGACAGACACAGGCTTGTATTGTGGTGTTTGATGTTACAAACAAGTTGTCATTTGAATCCCTGGACTACTGGTTACAAGAGTTCACCAGTAATGGCGGAAAACAAGCCGTTATGGCTGTGGTGGCTAATAAGCCGCTGCAGATTCTCAGGATTGTAAACTTGTTttacaaaagttttgaaaactgtccaGTAGCTAGAGTTAAAAGTGACCAGAGCCTTATACCAACTCATCATAATAGGCCAGCTGGATTTGAAAGTACAACTGGCGCCATTTTAGAGCTTTACCTTTATCCAGAACAAAGATCCAGCAATCTCTTGAACAGACTTGGTCAAATGCCCTGGTTTTCTGTCCATCGCCACATTATATCTCTCTCTTCAATACTGTCAACAAACTTGTTACTGCTTTTGCAACCGCGCTTGTGTGGTCACCTGGTTACCAAGCATCCaaagttcaaaatggcggagtttGCAGCTCATTTGAACCAAGGGACTACAAATGCCAACCCTACGATATTCGAGATAGTCGCCGAGGAATCTATGGCATCAGTTTTTAGACCGGCAATTTCTTATGCGTTAAAGGTGCTGGCAAGTTCTAATCCTGGAAGATGGGGCTGGATTTGGCGTTTCGGAGACGAACTTCACCTCTGTTTAGATTATATCGTTCAGAATTACTACTTGAAGAACTTTGGAGGTTCAATATCTGAACATTTTTACGGTCTTAAAAGAGTTAACAGACTTAATACCGAAAAAGACGAGGGAGAGCTTTCAAGTTATCAGAAGTACCTATCTGTGATGATGCTTGTCGGAGTACCATACGCAAAGCTGAAACTTGATCAACTGTTTGAAAGAGTGAAAGAAGAGTATGTTAGCGGATATTTGTCCTCTAACTCGCCACGAAAGAATTCTTATTTTGTTCACCTGAagagaatatttatttatgtgtACCCATTCTTACATTTCTCTTGGGAAACGATCTTCTTATGTTATCACTTACTGTACATCTTCAGATTCTCTGGAGTCCATTCCCCTCTCCTACATGCTATTGGAGTCTCGCTCCAAAGACTCACGAGACAAGATATTCTTGCGCACAACTTACAGAACAGTCTGCCCAACATAATGAGTGGAAGGACTGTGGCTGAAACGATATTGGCAATTCCAAGCTCAGTGACACAGTTACTAGCATCAGTTTTTGCCAATGGTCTTCCGGTTGTGGTGTTCTTTCTCAAATTCATAGATTGGTGGTATTCAAGTGACAATAAAGGTGCAGTGCAGTCTGTGATGCAGTTACCAGTTCCTCCACCACCACCTCAACCTAAGTCACATATCCTTGTTCGTTGCACCCTTAACAAACCTTGTTGCTTTGTGGATAAATGGCCAATTCCCTCTATGAAACGTACCTCTGTGGGACGTACCTCTATGGGACTTGCCTCTAAGGGACATACCTCTATGGGACATACCTCTGTGGACATACCTCTATGGGACATACCTCTGTGGGACGTACCTCTAAGGGTCATACCTCTGTGGGGCGTACCTCTACGGGACATACCTCTGTGGGACATACTTCTAAGAGACATACCTCTAAGGGACATACCTCTATGGGACATACCTCTGTGGGACATACCTCTATGGGACATACCTCTAAGGGACATACCTCTATGGGACATACCTCTAAGGGATATACCTGCAGGGAATCGTGTTGTATTCAGCATCATCTTGGACTGGATATTGGTTTTGATGAATACACCTACCACGATTCCCTGCAGGCCTATGCCAGAGGGAGCTGGCAATTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF04757 all species →	Pex2_Pex12	Pex2 / Pex12 amino terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017375 all species →	Family	Peroxisome assembly protein 12	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR006845 all species →	Domain	Pex, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12888 all species →	PEROXISOME ASSEMBLY PROTEIN 12 PEROXIN-12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0005779 all species →	Cellular Component	obsolete integral component of peroxisomal membrane	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016558 all species →	Biological Process	protein import into peroxisome matrix	Interproscan
GO:1990429 all species →	Cellular Component	peroxisomal importomer complex	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_82357.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.