Gene detail

Detailed information of evm.model.contig_85354.4 in Platygyra sinensis

Genomic Location: contig_85354:19538...34893
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_85354.4

ATGCTGTTGTCTTTTGTTTCGGTGTGGTACTTGTCGTCCTGTTCATCTCCAGAATATTGTGACAAAGACGGCTGCCCTGAGATCACTGGAGAAGGCCACCTGAAGCGCTTTGGTGAACACAGACCATCGGAAGGTGAAATTGCAAGCTTGAAGTTTGCTCCAAGTGGTATTGACTTCTACCACAACTACATTCACAAAAGGAAACCTGTAGTTATCAGGAATGGTGCTAACCACTGGCCAGCTGTACAACTCTGGCAAAATGAGTCCTATCTGACGACAAATTTTGGATCTGACATTTTTACTGTGGAATATCGGAAGAAATTCAAAAATGAACAGCCGGTCAGGAAACCACTCTCATTTGGGGAATTCCTGAAAATATATCAATCTGATGATGTTTACCTTGATTCCTCATTCACGCCAAACAGTCTTATGTTAAACGATATTATCCTGCCTTCAGTTTTAAACTGCCATGAGATATCATCATCAATTGATAGCCTTAATTTATTGTTTAATAGCGGTGATGCTAATTCAGCCTTCCATCATGATGGATTGGAGAATATTCTTACAGTCATCTCCGGTACAAAGACTGTGTACTTGGTTAATAGCACATACACCAAGGATCTTTATGCCGATAAGTTTACCATTGTCCCAGGAGTGTTGTCGATTGATCCAGAGAAGTTAGACTTGGAGACTTATCCAAAACTAGCAGATGTGCCTTACTATGAGGTAACTCTGAATAAAGGTGACATGTTGTATGTTCCCCAATACTGGTGGCATTTTGTTCGGTCATACAATGCTCCTAATATTGCTCTCAATGTGTGGTTTGCCATATTCAACTTTGAACAACAGTTTCGTGAGGCTGGGATCTCTGAAGATACAGACGTGACTAAGGTAACAGAGTTGTTTGATAAGCTTGTGAAGAATGAACCTGACAAGATTCAGTGCCAAGAGGAGAAGCATGCCTTGAACGCTATTCTGAAAATCAATGCCAGTGACCCCAGCAGTGGACCGCTGAGGCTTCCAAAACAAAATGAGAGACCAGCAGACATCAAACTTGCAAGTGGATACACAATGCCAGTAATGGGATTTGGAACAGCCACCCTTATGGACAACACAACAGCCACTGTTATAACAGCTCTTGAAGTTGGCTACAGGCTGATAGATACTGCCCAAGGATATCATAACTCAGAGCCTCAAGTTGCTGAAGCAATTGCACAGAGTGGAATTCCTCGATCAGAAATATTTATCATGACCAAGCTTCATCCCAGATTTCTAGGTTATGATACAACTTTAGAGGCAATTGAAATGTCTCTGAAATCTCTGAACACAGACTACATTGATTTGTTTCTAATACACTCTCAACAGTGTGATGATTTTCTTCTAACCTGTGAAGAAGGAGAACCAAAAGGGACATGGCAAGAGAGCTGGAAAGCAATGGAAGAAATGCAGAAGAAAGGAAAGATTCGCAGCCTGGGTGTGAGCAATTTTTATCTTGAAGATCTGGAGGAACTAGTTCAGCTTGCCACAGTACCAGTTTCTGCAGTTCAAAACTGGTTTGACCCGTTTCATCAAGATCGTCGTGTTAGAGCCTTCTGTCATGAGCACAATATTCGGTACATTGGTTACTCCAGTCTTGGAACTCAATGGGTCTATTTCCACGGTTTGCAAAAAAATCCTGTTCTAACATCTTCACTGATTTTGGAGATTGCCAGTCATTACGAGTTTGTTGCTTCTCAAGTTGTCCTTCGATGGGCGATTCACCTGAATGTGACAGTGATACCAAGATCCAAGAACCCTCGAAATATTTACTTGAATTTCCGAGCTCTCGACTTCTCTCTGAATGACGATGAAATCGCGTATTTAACCAACATCACCGATTATGAATATCATCCCCTGGAACAGAAACAGGAGAAAGGATTAGCTTGCGCGGACAAGCATTCAAACTGCAAGCAATGGGCGTCCTCTGGTGAATGCCTAACAAACCCAGACTGGATGTTGATTAACTGTCAAGAGAGCTGCGGATTATGCTATGACGAGGACCCCAGTGGAGAGTCGTCAGTTGAACCACTCGTTTTTGTCGGTTCTGAAGATCACATCATGTACGCACTGAGTGCTGCCAACGGAAACGTCATCTGGAAGTATCGTACTCTTGGCAAGATCCTGTCATCTGCAGCTCTCAGCCAGGACGAAGAGACGGTTTATTTCGGTTCCAACGATGGCAACGTGTATGCCGTTACAGCAGCCGATGGATCTCTCGTTTGGAACTTGAAGACCGAAGGTGCCGTTGTGGCAAGCCCCATCGTGGCTTTGGACGGAACTGTCTATGTTGGGTCCCACGATAAATTCGTATATGCGATAGATGGCAAAAGCGGGTCCGCTTTGTGGAGTACAAACCTTCAGTGTCCCATTTGGGGTGCTGTTACTGTAGACAACGAACGAGGGCTGTTATTCACCGGCTGTGCCTCGGATAAATCGAACACTTCGGACTCAGAGGACGCGTCTTATATTTTTGCCTTAAACGCCAAGTCCGGTGAGATCGTTTGGAAGTTCGACAGCGCCGGAAGTGTTTATGGCTCACCCGCTCTCCTGCCCGGTGGTCGGACCGTGTTCTTTGCTTCGCTAGACCACAACATCTACGCTCTTGACCGCGAAACTGGTAAGCTATACTGGTCGTGTGACACGGGATCTGAAGTGGAGTCCTCTCCAGTGGTGAGTAAGTTAGATGGCACGCTGTACGTCGGCTTAATCAAGGATCAGTTGATTGCGGTGAATACCATCGATGGGCCTCTGGCGGGAAAAATCAAGTGGGCAGTGAATACTGGCGGGGAGGTGGTGTCGTCACCTGTTATCACTGAGGATGGGAGGGTTTTCATTGGCTCAGGCGATGGTCGCGTCTTAGCACTCAAACAAGCCGACGGTTCCCATATATGGTCTCCAACAACAAGTGACTACATCGTGGCTTCGGTGGCAGTATCACGTGATAACGTCGTGTACGCCGCTAGCTCGAATAACTTCGTGTATGCATTACATGGCGAAGATGGATCGATTATTTGGAAGTTTGAAACTGGCGCTGGTGTTGTGGCCACTCCAGTTCTTTTCCCTGAGCATGCCATGCCAGTTGGATAA

Transcript

evm.model.contig_85354.4

ATGCTGTTGTCTTTTGTTTCGGTGTGGTACTTGTCGTCCTGTTCATCTCCAGAATATTGTGACAAAGACGGCTGCCCTGAGATCACTGGAGAAGGCCACCTGAAGCGCTTTGGTGAACACAGACCATCGGAAGGTGAAATTGCAAGCTTGAAGTTTGCTCCAAGTGGTATTGACTTCTACCACAACTACATTCACAAAAGGAAACCTGTAGTTATCAGGAATGGTGCTAACCACTGGCCAGCTGTACAACTCTGGCAAAATGAGTCCTATCTGACGACAAATTTTGGATCTGACATTTTTACTGTGGAATATCGGAAGAAATTCAAAAATGAACAGCCGGTCAGGAAACCACTCTCATTTGGGGAATTCCTGAAAATATATCAATCTGATGATGTTTACCTTGATTCCTCATTCACGCCAAACAGTCTTATGTTAAACGATATTATCCTGCCTTCAGTTTTAAACTGCCATGAGATATCATCATCAATTGATAGCCTTAATTTATTGTTTAATAGCGGTGATGCTAATTCAGCCTTCCATCATGATGGATTGGAGAATATTCTTACAGTCATCTCCGGTACAAAGACTGTGTACTTGGTTAATAGCACATACACCAAGGATCTTTATGCCGATAAGTTTACCATTGTCCCAGGAGTGTTGTCGATTGATCCAGAGAAGTTAGACTTGGAGACTTATCCAAAACTAGCAGATGTGCCTTACTATGAGGTAACTCTGAATAAAGGTGACATGTTGTATGTTCCCCAATACTGGTGGCATTTTGTTCGGTCATACAATGCTCCTAATATTGCTCTCAATGTGTGGTTTGCCATATTCAACTTTGAACAACAGTTTCGTGAGGCTGGGATCTCTGAAGATACAGACGTGACTAAGgTAACAGAGTTGTTTGATAAGCTTGTGAAGAATGAACCTGACAAGATTCAGTGCCAAGAGGAGAAGCATGCCTTGAACGCTATTCTGAAAATCAATGCCAGTGACCCCAGCAGTGGACCGCTGAGGCTTCCAAAACAAAATGAGAGACCAGCAGACATCAAACTTGCAAGTGGATACACAATGCCAGTAATGGGATTTGGAACAGCCACCCTTATGGACAACACAACAGCCACTGTTATAACAGCTCTTGAAGTTGGCTACAGGCTGATAGATACTGCCCAAGGATATCATAACTCAGAGCCTCAAGTTGCTGAAGCAATTGCACAGAGTGGAATTCCTCGATCAGAAATATTTATCATGACCAAGCTTCATCCCAGATTTCTAGGTTATGATACAACTTTAGAGGCAATTGAAATGTCTCTGAAATCTCTGAACACAGACTACATTGATTTGTTTCTAATACACTCTCAACAGTGTGATGATTTTCTTCTAACCTGTGAAGAAGGAGAACCAAAAGGGACATGGCAAGAGAGCTGGAAAGCAATGGAAGAAATgcagaagaaaggaaagattCGCAGCCTGGGTGTGAGCAATTTTTATCTTGAAGATCTGGAGGAACTAGTTCAGCTTGCCACAGTACCAGTTTCTGCAGTTCAAAACTGGTTTGACCCGTTTCATCAAGATCGTCGTGTTAGAGCCTTCTGTCATGAGCACAATATTCGGTACATTGGTTACTCCAGTCTTgGAACTCAATGGGTCTATTTCCacggtttgcaaaaaaatcctGTTCTAACATCTTCACTGATTTTGGAGATTGCCAGTCATTACGAGTTTGTTGCTTCTCAAGTTGTCCTTCGATGGGCGATTCACCTGAATGTGACAGTGATACCAAGATCCAAGAACCCTCGAAATATTTACTTGAATTTCCGAGCTCTCGACTTCTCTCTGAATGACGATGAAATCGCGTATTTAACCAACATCACCGATTATGAATATCATCCCCTGGAACAGAAACAGGAGAAAGGATTAGCTTGCGCGGACAAGCATTCAAACTGCAAGCAATGGGCGTCCTCTGGTGAATGCCTAACAAACCCAGACTGGATGTTGATTAACTGTCAAGAGAGCTGCGGATTATGCTATGACGAGGACCCCAGTGGAGAGTCGTCAGTTGAACCACTCGTTTTTGTCGGTTCTGAAGATCACATCATGTACGCACTGAGTGCTGCCAACGGAAACGTCATCTGGAAGTATCGTACTCTTGGCAAGATCCTGTCATCTGCAGCTCTCAGCCAGGACGAAGAGACGGTTTATTTCGGTTCCAACGATGGCAACGTGTATGCCGTTACAGCAGCCGATGGATCTCTCGTTTGGAACTTGAAGACCGAAGGTGCCGTTGTGGCAAGCCCCATCGTGGCTTTGGACGGAACTGTCTATGTTGGGTCCCACGATAAATTCGTATATGCGATAGATGGCAAAAGCGGGTCCGCTTTGTGGAGTACAAACCTTCAGTGTCCCATTTGGGGTGCTGTTACTGTAGACAACGAACGAGGGCTGTTATTCACCGGCTGTGCCTCGGATAAATCGAACACTTCGGACTCAGAGGACGCGTCTTATATTTTTGCCTTAAACGCCAAGTCCGGTGAGATCGTTTGGAAGTTCGACAGCGCCGGAAGTGTTTATGGCTCACCCGCTCTCCTGCCCGGTGGTCGGACCGTGTTCTTTGCTTCGCTAGACCACAACATCTACGCTCTTGACCGCGAAACTGGTAAGCTATACTGGTCGTGTGACACGGGATCTGAAGTGGAGTCCTCTCCAGTGGTGAGTAAGTTAGATGGCACGCTGTACGTCGGCTTAATCAAGGATCAGTTGATTGCGGTGAATACCATCGATGGGCCTCTGGCGGGAAAAATCAAGTGGGCAGTGAATACTGGCGGGGAGGTGGTGTCGTCACCTGTTATCACTGAGGATGGGAGGGTTTTCATTGGCTCAGGCGATGGTCGCGTCTTAGCACTCAAACAAGCCGACGGTTCCCATATATGGTCTCCAACAACAAGTGACTACATCGTGGCTTCGGTGGCAGTATCACGTGATAACGTCGTGTACGCCGCTAGCTCGAATAACTTCGTGTATGCATTACATGGCGAAGATGGATCGATTATTTGGAAGTTTGAAACTGGCGCTGGTGTTGTGGCCACTCCAGTTCTTTTCCCTGAGCATGCCATGCCAGTTGGATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13360 all species →	PQQ_2	PQQ-like domain	Repeat	Interproscan
PF00248 all species →	Aldo_ket_red	Aldo/keto reductase family	Domain	Interproscan
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan
PF13621 all species →	Cupin_8	Cupin-like domain	Domain	Interproscan
PF13570 all species →	PQQ_3	PQQ-like domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020471 all species →	Family	Aldo-keto reductase	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR002372 all species →	Repeat	Pyrrolo-quinoline quinone repeat	Interproscan
IPR036812 all species →	Homologous_superfamily	NADP-dependent oxidoreductase domain superfamily	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR023210 all species →	Domain	NADP-dependent oxidoreductase domain	Interproscan
IPR041667 all species →	Domain	Cupin-like domain 8	Interproscan
IPR018391 all species →	Repeat	Pyrrolo-quinoline quinone beta-propeller repeat	Interproscan
IPR018170 all species →	Conserved_site	Aldo/keto reductase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43827 all species →	2,5-DIKETO-D-GLUCONIC ACID REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_85354.4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.