Detailed information of evm.model.contig_86388.2 in Platygyra sinensis

Genomic Location: contig_86388:2035...26684
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003906 (this species only) · gene tree & orthology
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16529
all species →		Ge1_WD40WD40 region of Ge1, enhancer of mRNA-decapping proteinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR032401
all species →		DomainEnhancer of mRNA-decapping protein 4, WD40 repeat regionInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR045152
all species →		FamilyEnhancer of mRNA-decapping protein 4-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15598
all species →		ENHANCER OF MRNA-DECAPPING PROTEIN 4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000932
all species →		Cellular ComponentP-bodyInterproscan
GO:0031087
all species →		Biological Processdeadenylation-independent decapping of nuclear-transcribed mRNAInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12616EDC4; enhancer of mRNA-decapping protein 4-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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