Gene detail

Detailed information of evm.model.contig_86991.1 in Platygyra sinensis

Genomic Location: contig_86991:128...14292
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_86991.1

ATGCCTGGAAGGCTATACTCAGTTATAAGATGCACCCCAAAGATGGAGCAGACTTTCATTGAACATATATATAACCAAGATAAGATGGTGAATCCCTCACGTCTGCCTGTCGTAGTAGGAGGTTTGTTGGATGTGGATTGCACAGAAGATGTCATCAAAAGTCTCATGATGGCTGTACGTGGCCAATTCTCAACTGATGAACTAGTTGAAGAAGTTGAAAAAAGAAACCGTCTCAAGCTATTATTGCCTTGGCTAGAAGCAAAAATACACGATGGTTCTGAAGAACCGGCCACCCATAATGCACTGGCAAAGATCTATATTGATGCCAACAACAATCCTGAGAGATTTCTTAGAGAAAATCCTTATTACGACAGTAAAGTGGTCGGTAAATACTGTGAAAAGAGAGATCCACACTTGGCCTGCATAGCTTATGAAAGAGGACAGTGTGATGCAGAGCTAATCAAGGTTTGTAATGAGAACTCCCTGTTCAAGAGTCTGGCAAGATACCTTGTTCGAAGGAGGGATCCAGATCTTTGGGCAGAAGTACTACTGGAAACAAACCAGTTCCGCAGGCAACTTATTGATCAGGTTGTTCAAACAGCACTTTCAGAGACTCAAGATCCTGAGGATGTGTCATGTACAGTCAAGGCATTCATGACTGCTGATCTTCCAAATGAACTTATTGAACTTCTAGAAAAGATTGTCCTAGAAAACTCAGTTTTCAGTGACCACAGAAATCTGCAGAACTTGCTGATTTTGACAGCTATCAAGGCTGATCGGACACGTGTAATGGAGTACATCACTCGCCTGGACAATTATGATGCACCTGATATTGCTAGTATTGCCATTGGCAGTGAACTTTATGAAGAAGCATTTGCCATCTTTAAGAAATTTGATGTGAATACATCTGCTATTCAGGTGTTGATAGAAAATGTTCAAAACTTAGACCGGGCATACGAGTTCGCCGAACGTTGTAACGAAGCGGCAGTGTGGAGTTTGTTGGCCAAAGCTCAGTTACAAAAGAACATGGTAAAAGAAGCTATTGATTGCTTTATTAAAGCTGATGATCCATCTGCATACACTGAGGTTGTGGAAGCAGCCAATAGAGAAGGAAACTACGAAGATGTTGTTCGTTATTTACAGATGGCCCGGAAGAAGTCTAGAGATTCATTTGTAGAAACAGAGCTTATCTTTGCCTTTGCTAAGACAAACCGTCTTGCTGAACTCGAAGAATTCATTTCCGGTCCAAACCATGCTCAAATTCAGCAGGTTGGCGATCGATGTTTCGACGAAAAAATGTACGACGCTGCCAAACTTCTGTATAATAACGTGTCGAACTTTGCAAAGCTAGCTTCAACTTTAGTTCACTTAGGAGAATACCAGGCAGCAGTGGATGGTGCTAGGAAAGCTAACAGTACCAAGACATGGAAGGAGGTTTGTTTTGCATGTGTCGAAGGAGAAGAATTCCGTTTGGCCCAAATGTGCGGACTTCATATCGTGGTCCATGCAGACGAATTAGAAGAGTTAATCAATTTCTACCAGAATCAAGGCTACTTTGAAGAGCTCATATCTCTGATGGAGGCTGCGCTGGGCCTGGAGCGAGCTCACATGGGCATGTTCACGGAGTTAGCGATCTTATATTCTAAATACAAACCTTCTAAGATGAGGGAACATCTTGAACTCTTCTGGTCTAGGGTTAACATTCCAAAGGTTCTCCGCGCAGCAGAACAAGCTCACTTATGGTCAGAGCTGGTGTTTCTGTACGAAAAATACGAGGAGTATGACAATGCTGTTCAAACTATGATGACTCACCCTACTGTGGCATGGAAAGAGGCATTGTTCAAAGACGTCATCTGTAAAGTGGCTAACATTGAATTGTATTACAAATCACTACAGTTCTACTTGGATTTCAGGCCAATGTTGATCAATGATCTCCTTATGGTTCTCACTCCTCGCATGGACCACACTCGCGCTGTTAATTTCTTCAAAAAGGTGAACCATCTGCCACTTGTGAAGCCGTATCTACGGTCGGTTCAAAGTCACAACAACAAGGCCATAAATGAAGCTTTGAATGATTTGCTTATTGAAGAGGAAGATTACAATGGCCTCCGTGCGTCTATTGACGCTTTTGATAATTTTGACAACATTGCGCTCGCTCAGCGCCTGGAAAAGCACGAGCTGATCGAGTTCCGCCGTATAGCGGCTTATCTTTACAAAGGCAACAACCGCTGGCAGCAGTCTGTGGAGCTCTGTAAAAGGGACAAACTTTTCAAGGACGCCATGTTATACGCGGCCGAGTCACGTAACTGCGCAACAGCAGAAGATCTTATCCACTGGTTCCTGGAAATAGGCAACAATGAGTGCTTTGCCGCCTGCCTGTTTATGTGCTATGATCTGCTCAGCCCTGATGTGGTCCTAGAGCTTGCATGGAGACACAATCTTCTCGATTTTGCAATGCCCTATATGGTACAGGTCCTCAAGGAGTACATAGACAAGGTCAACAAATTAGCTGTCTCAGAAGCGGAGCGGAAAGATCAAGAAGAGAGCAAGCAAGATCAGCCAATCGTGTTCGGTGCTGACCAGTTAATGATAACAGCAGGACCAAGCATGGTACCTAACATACCAGGCATGGCGCCAGCCCAACAGTACCCCCCAGGGTATCAGATGCCCCCGGGCTACATGTGA

Transcript

evm.model.contig_86991.1

ATGCCTGGAAGGCTATACTCAGTTATAAGATGCACCCCAAAGATGGAGCAGACTTTCATTGAACATATATATAACCAAGATAAGATGGTGAATCCCTCACGTCTGCCTGTCGTAGTAGGAGGTTTGTTGGATGTGGATTGCACAGAAGATGTCATCAAAAGTCTCATGATGGCTGTACGTGGCCAATTCTCAACTGATGAACTAGTTGAAGAAgttgaaaaaagaaaccgtCTCAAGCTATTATTGCCTTGGCTAGAAGCAAAAATACACGATGGTTCTGAAGAACCGGCCACCCATAATGCACTGGCAAAGATCTATATTGATGCCAACAACAATCCTGAGAGATTTCTTAGAGAAAATCCTTATTACGACAGTAAAGTGGTCGGTAAATACTGTGAAAAGAGAGATCCACACTTGGCCTGCATAGCTTATGAAAGAGGACAGTGTGATGCAGAGCTAATCAAGGTTTGTAATGAGAACTCCCTGTTCAAGAGTCTGGCAAGATACCTTGTTCGAAGGAGGGATCCAGATCTTTGGGCAGAAGTACTACTGGAAACAAACCAGTTCCGCAGGCAACTTATTGATCAGGTTGTTCAAACAGCACTTTCAGAGACTCAAGATCCTGAGGATGTGTCATGTACAGTCAAGGCATTCATGACTGCTGATCTTCCAAATGAACTTATTGAACTTCTAGAAAAGATTGTCCTAGAAAACTCAGTTTTCAGTGACCACAGAAATCTGCAGAACTTGCTGATTTTGACAGCTATCAAGGCTGATCGGACACGTGTAATGGAGTACATCACTCGCCTGGACAATTATGATGCACCTGATATTGCTAGTATTGCCATTGGCAGTGAACTTTATGAAGAAGCATTTGCCATCTTTAAGAAATTTGATGTGAATACATCTGCTATTCAGGTGTTGATAGAAAATGTTCAAAACTTAGACCGGGCATACGAGTTCGCCGAACGTTGTAACGAAGCGGCAGTGTGGAGTTTGTTGGCCAAAGCTCAGTTACAAAAGAACATGGTAAAAGAAGCTATTGATTGCTTTATTAAAGCTGATGATCCATCTGCATACACTGAGGTTGTGGAAGCAGCCAATAGAGAAGgaaactacgAAGATGTTGTTCGTTATTTACAGATGGCCCGGAAGAAGTCTAGAGATTCATTTGTAGAAACAGAGCTTATCTTTGCCTTTGCTAAGACAAACCGTCTTGCTGAACTCGAAGAATTCATTTCCGGTCCAAACCATGCTCAAATTCAGCAGGTTGGCGATCGATGTTTCGACGAAAAAATGTACGACGCTGCCAAACTTCTGTATAATAACGTGTCGAACTTTGCAAAGCTAGCTTCAACTTTAGTTCACTTAGGAGAATACCAGGCAGCAGTGGATGGTGCTAGGAAAGCTAACAGTACCAAGACATGGAAGGAGgTTTGTTTTGCATGTGTCGAAGGAGAAGAATTCCGTTTGGCCCAAATGTGCGGACTTCATATCGTGGTCCATGCAGACGAATTAGAAGAGTTAATCAATTTCTACCAGAATCAAGGCTACTTTGAAGAGCTCATATCTCTGATGGAGGCTGCGCTGGGCCTGGAGCGAGCTCACATGGGCATGTTCACGGAGTTAGCGATCTTATATTCTAAATACAAACCTTCTAAGATGAGGGAACATCTTGAACTCTTCTGGTCTAGGGTTAACATTCCAAAGGTTCTCCGCGCAGCAGAACAAGCTCACTTATGGTCAGAGCTGGTGTTTCTGTACGAAAAATACGAGGAGTATGACAATGCTGTTCAAACTATGATGACTCACCCTACTGTGGCATGGAAAGAGGCATTGTTCAAAGACGTCATCTGTAAAGTGGCTAACATTGAATTGTATTACAAATCACTACAGTTCTACTTGGATTTCAGGCCAATGTTGATCAATGATCTCCTTATGGTTCTCACTCCTCGCATGGACCACACTCGCGCTGTTAATTTCTTCAAAAAGGTGAACCATCTGCCACTTGTGAAGCCGTATCTACGGTCGGTTCAAAGTCACAACAACAAGGCCATAAATGAAGCTTTGAATGATTTGCTTATTGAAGAGGAAGATTACAATGGCCTCCGTGCGTCTATTGACGCTTTTGATAATTTTGACAACATTGCGCTCGCTCAGCGCCTGGAAAAGCACGAGCTGATCGAGTTCCGCCGTATAGCGGCTTATCTTTACAAAGGCAACAACCGCTGGCAGCAGTCTGTGGAGCTCTGTAAAAGGGACAAACTTTTCAAGGACGCCATGTTATACGCGGCCGAGTCACGTAACTGCGCAACAGCAGAAGATCTTATCCACTGGTTCCTGGAAATAGGCAACAATGAGTGCTTTGCCGCCTGCCTGTTTATGTGCTATGATCTGCTCAGCCCTGATGTGGTCCTAGAGCTTGCATGGAGACACAATCTTCTCGATTTTGCAATGCCCTATATGGTACAGGTCCTCAAGGAGTACATAGACAAGGTCAACAAATTAGCTGTCTCAGAAGCGGAGCGGAAAGATCAAGAAGAGAGCAAGCAAGATCAGCCAATCGTGTTCGGTGCTGACCAGTTAATGATAACAGCAGGACCAAGCATGGTACCTAACATACCAGGCATGGCGCCAGCCCAACAGTACCCCCCAGGGTATCAGATGCCCCCGGGCTACATGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00637 all species →	Clathrin	Region in Clathrin and VPS	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR016341 all species →	Family	Clathrin, heavy chain	Interproscan
IPR000547 all species →	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10292 all species →	CLATHRIN HEAVY CHAIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0032051 all species →	Molecular Function	clathrin light chain binding	Interproscan
GO:0071439 all species →	Cellular Component	clathrin complex	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006898 all species →	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0045334 all species →	Cellular Component	clathrin-coated endocytic vesicle	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04646	CLTC; clathrin heavy chain	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.