Gene detail

Detailed information of evm.model.contig_87265.1 in Platygyra sinensis

Genomic Location: contig_87265:1833...23445
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_87265.1

ATGGATAATTTTTCAACCCAACATTATGCAACTGCTCCAGCTCCTGAAAAAATTGAAGTCTTTGTAAATGACAAAAGTCTGTTAGTTGATCCTGGGATAACAGTGTTACAGGCCTGTGCCATGGCTGGTGTAGAAATTCCAAGGTTTTGCTATCATGACAGACTTTCTGTGGCTGGGAATTGTCGAATGTGCCTTGTTGAGGTGGAGAGATCCATTAAGCCTGTTGCATCTTGTGCAATGCCGGTAATGAAAGGGATGAAGATCAAAACAGACTCACCAGTGACAAGAAAAGCAAGGGAGGGTGTGATGGAGTTTTTGTTGGTGAATCATCCACTGGACTGTCCCATCTGTGATCAAGGTGGAGAGTGTGACCTTCAGGATCAGTCAATGGCTTTTGGCAGTGACAGAAGCAGATTTGTAGACAACAGATTTTCAGGAAAGAGGGCTGTGGAAGACAAAAATGTAGGGCCTCTTGTAAAAACTATTATGACTCGCTGCATTCACTGCACCAGATGCATTCGGTTTGCCAGTGAGGTAGCGGGTGTAGATGATCTGGGTACAACTGGAAGAGGGAATGACATGCAAGTTGGAACCTATGTGGAGAAAATGTTTAAGTCAGAGCTGTCAGGAAACATTGTTGATCTCTGCCCAGTTGGAGCCCTCACATCAAAACCATATGCATTTACAGCCAGACCCTGGGAACTCAGGAAAACTGATTCTGTGGATGTGATGGATGCTGTAGGAAGTAATATTGTGGTAAACACACGGTGTGGTGAAGTCATGAGGATTCTGCCAAGAATGAATGAGGATATAAATGAAGAGTGGATTTCAGACAAGACAAGGTATTCCTATGATGGGTTGAAACGACAGCGTCTCACTAAGCCGATGGTCAAAGATGAGAAAGGGAACCTGACAGCCTGCACATGGGAGGAAGCTCTGGTGGAAGTCGCTCAGAAACTATCTCAGGCCAAGGGTAATGAAATTGCAGCTGTCGCTGGGGGTTTTGCCGATGCCGAGGCCTTGGTGGCTTTGAAAGACTTGCTTAACAGGTTTGACAGTGAGGGTCTGTACACTGAGGAAGGATTTCCATCAGATGGAGCAGGGACTGACTTCAGATCCAGTTACATCATGAATAGCACTATAGCAGGAATTGAGGATGCAGACGTATTGTTGATTGTTGGGGCTAATCCCAGATATGAAGCCCCTCTGGTGAATGCCCGTATTCGTAAGGGGTGGATGCATAATGATCTCCAAGTTGCTCTTGTTGGTACTAAAGTAGACCTCACATACACTTATGAGCATCTTGGTGACACAGCCAGCAGCCTGAAAGAGATTTTATCTGGGGATCATGCATTTTCAAAGGTTTTGGCCAATGCTGAGCGCCCCATGATATTGGTCGGGAATACCATTCTTCAGGGACATGAAGGTGCTGCAGTACATCAAGTAGTTGCTGATATGTCACACAAGTTGAAGAATTCTAAGAAAGTCGAGAAAGGCTGGAAGGTCCTTAATGTATTACACAGGGTGGCCAGCCAAGTTGCAGCTCTGGATATTGGATACAAACCCGGAGTTAACAAAATGACAGAGAAACCAAAACTGCTGTTCCTGCTGGGCGCTGATGCTGGTCTTGTGAAGCGGGAAAATCTTCCAAAAGACTGTTGTGTTGTATATCAAGGTCACCATGGCGACCATGGCGCACACATTGCTGACGTCATCCTGCCCGGTGCAGCGTACACAGAGAAGACCGCCACTTACGTAAACACAGAAGGGAGGGCCCAGCAGACCAGAAGGGCTGTCACGCCACCCGTGTACGCGCGTGACGATTGGAAGATCATCAGAGCGCTGTCAGAGATCGCGGGTAATGCCCTTCCATACGACAACTTAGAGGAAATCAGACGAAGACTCTCCGAACTGTCTCCGAACCTGACTCGGTATGGTGACGTAGAGGAGGCGAACTTCTTCAACTTAGCTCTGGGTTTGATGCAGATCAATCCGAGATCTCTCGGATCATGGTGCGTCAAAGGAACCGAAGAATCCACTTCCAGACTGGATTCTTCGATTCCTTTGACGCGCCATGATCTGAAAGATCTTGGATTGATCAGCTCGGGTAGACTTGCGAGAGAACTGGACACCAGCGCAAAACAGCAGACTTGGCAGGCCATTGTGCTTTCCGCAGTGCTCGCTTCGCTCGGCCTTTTCCCCCGTCTCCACGGAGGTGATGAATCTGGCGAGTCTCGAGGTCGTCCGTCTCAGGACCAACAGTCAACAGTAGAAACCTTAACAAGACATGCTACTCTGCATTCCTCGCTGGTTACAGCTTCGAGAGGAGGCAGAGCTCTAGCTTACCTTAAAGAAATCTTCGCCGCTAATCCAGACAACAAGATGGCGTTGAAACTGTTCGGAAATAAAGCCGCCGTTCTAATTGAGCAGCGGCGACAAGAACAGAAAGGCAAGGGAGTGATTCACCCATTCAGCACATTTCGATGGTACTGGGATATTCTCCTAATCTCTTTTATTTCCATGCACGTGATTCTTCTGCCAGTCAGCATTTCGTTCTTAAGTGACGATCTCTCACTACACTGGCTCATCCTAAATGGAATCTCTGATAGCATTTTCATCGTGGACATTTGCTTGAATTTTAAAACCGGAATTGTCGATCCTAACAATCAAGAGGAGGTGATATTGGACAAGAAAGTTATCCGTCGGAAGTACCTGCGAGGCTGGTTTTTTATCGATTTGCTCTCGTCACTTCCGTTTGATTACGCCTACTTTATCGTGTCATCTTCGTCGACGCAGCAAACGCTGATCAAGGCATCGCGAGCTCTTCGCATCCTCAAACTTGCCAAGTTGCTGAGCCTTTTGCGACTTCTGCGAGTTTCAAGACTGGTGCGATATCTCAAAAGATTTGAAGAG

Transcript

evm.model.contig_87265.1

atggataatttttcaaCCCAACATTATGCAACTGCTCCAGCTCCTGAAAAAATTGAAGTCTTTGTAAATGACAAAAGTCTGTTAGTTGATCCTGGGATAACAGTGTTACAGGCCTGTGCCATGGCTGGTGTAGAAATTCCAAGGTTTTGCTATCATGACAGACTTTCTGTGGCTGGGAATTGTCGAATGTGCCTTGTTGAGGTGGAGAGATCCATTAAGCCTGTTGCATCTTGTGCAATGCCGGTAATGAAAGGGATGAAGATCAAAACAGACTCACCAGTGACAAGAAAAGCAAGGGAGGGTGTGATGGAGTTTTTGTTGGTGAATCATCCACTGGACTGTCCCATCTGTGATCAAGGTGGAGAGTGTGACCTTCAGGATCAGTCAATGGCTTTTGGCAGTGACAGAAGCAGATTTGTAGACAACAGATTTTCAGGAAAGAGGGCTGTGGAAGACAAAAATGTAGGGCCTCTTGTAAAAACTATTATGACTCGCTGCATTCACTGCACCAGATGCATTCGGTTTGCCAGTGAGGTAGCGGGTGTAGATGATCTGGGTACAACTGGAAGAGGGAATGACATGCAAGTTGGAACCTATGTGGAGAAAATGTTTAAGTCAGAGCTGTCAGGAAACATTGTTGATCTCTGCCCAGTTGGAGCCCTCACATCAAAACCATATGCATTTACAGCCAGACCCTGGGAACTCAGGAAAACTGATTCTGTGGATGTGATGGATGCTGTAGGAAGTAATATTGTGGTAAACACACGGTGTGGTGAAGTCATGAGGATTCTGCCAAGAATGAATGAGGATATAAATGAAGAGTGGATTTCAGACAAGACAAGGTATTCCTATGATGGGTTGAAACGACAGCGTCTCACTAAGCCGATGGTCAAAGATGAGAAAGGGAACCTGACAGCCTGCACATGGGAGGAAGCTCTGGTGGAAGTCGCTCAGAAACTATCTCAGGCCAAGGGTAATGAAATTGCAGCTGTCGCTGGGGGTTTTGCCGATGCCGAGGCCTTGGTGGCTTTGAAAGACTTGCTTAACAGGTTTGACAGTGAGGGTCTGTACACTGAGGAAGGATTTCCATCAGATGGAGCAGGGACTGACTTCAGATCCAGTTACATCATGAATAGCACTATAGCAGGAATTGAGGATGCAGACGTATTGTTGATTGTTGGGGCTAATCCCAGATATGAAGCCCCTCTGGTGAATGCCCGTATTCGTAAGGGGTGGATGCATAATGATCTCCAAGTTGCTCTTGTTGGTACTAAAGTAGACCTCACATACACTTATGAGCATCTTGGTGACACAGCCAGCAGCCTGAAAGAGATTTTATCTGGGGATCATGCATTTTCAAAGGTTTTGGCCAATGCTGAGCGCCCCATGATATTGGTCGGGAATACCATTCTTCAGGGACATGAAGGTGCTGCAGTACATCAAGTAGTTGCTGATATGTCACACAAGTTGAAGAATTCTAAGAAAGTCGAGAAAGGCTGGAAGGTCCTTAATGTATTACACAGGGTGGCCAGCCAAGTTGCAGCTCTGGATATTGGATACAAACCCGGagttaacaaaatgacagaGAAACCAAAACTGCTGTTCCTGCTGGGCGCTGATGCTGGTCTTGTGAAGCGGGAAAATCTTCCAAAAGACTGTTGTGTTGTATATCAAGGTCACCATGGCGACCATGGCGCACACATTGCTGACGTCATCCTGCCCGGTGCAGCGTACACAGAGAAGACCGCCACTTACGTAAACACAGAAGGGAGGGCCCAGCAGACCAGAAGGGCTGTCACGCCACCCGTGTACGCGCGTGACGATTGGAAGATCATCAGAGCGCTGTCAGAGATCGCGGGTAATGCCCTTCCATACGACAACTTAGAGGAAATCAGACGAAGACTCTCCGAACTGTCTCCGAACCTGACTCGGTATGGTGACGTAGAGGAGGCGAACTTCTTCAACTTAGCTCTGGGTTTGATGCAGATCAATCcgagatctctcggatcatggtgcgtcaaaggaaccgaagaatccacttccagactGGATTCTTCGATTCCTTTGACGCGCCATGAtctgaaagatcttggattgatcagCTCGGGTAGACTTGCGAGAGAACTGGACACCAGCGCAAAACAGCAGACTTGGCAGGCCATTGTGCTTTCCGCAGTGCTCGCTTCGCTCGGCCTTTTCCCCCGTCTCCACGGAGGTGATGAATCTGGCGAGTCTCGAGGTCGTCCGTCTCAGGACCAACAGTCAACAGTAGAAACCTTAACAAGACATGCTACTCTGCATTCCTCGCTGGTTACAGCTTCGAGAGGAGGCAGAGCTCTAGCTtaccttaaagaaatcttcgcCGCTAATCCAGACAACAAGATGGCGTTGAAACTGTTCGGAAATAAAGCCGCCGTTCTAATTGAGCAGCGGCGACAAGAACAGAAAGGCAAGGGAGTGATTCACCCATTCAGCACATTTCGATGGTACTGGGATATTCTCCTAATCTCTTTTATTTCCATGCACGTGATTCTTCTGCCAGTCAGCATTTCGTTCTTAAGTGACGATCTCTCACTACACTGGCTCATCCTAAATGGAATCTCTGATAGCATTTTCATCGTGGACATTTGCTTGAATTTTAAAACCGGAATTGTCGATCCTAACAATCAAGAGGAGGTGATATTGGACAAGAAAGTTATCCGTCGGAAGTACCTGCGAGGCTGGTTTTTTATCGATTTGCTCTCGTCACTTCCGTTTGATTACGCCTACTTTATCGTGTCATCTTCGTCGACGCAGCAAACGCTGATCAAGGCATCGCGAGCTCTTCGCATCCTCAAACTTGCCAAGTTGCTGAGCCTTTTGCGACTTCTGCGAGTTTCAAGACTGGTGCGATATCTCAAAAGATTTGAAGAG

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005696 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13510 all species →	Fer2_4	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan
PF08412 all species →	Ion_trans_N	Ion transport protein N-terminal	Family	Interproscan
PF00384 all species →	Molybdopterin	Molybdopterin oxidoreductase	Family	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF10588 all species →	NADH-G_4Fe-4S_3	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010228 all species →	Family	NADH:ubiquinone oxidoreductase, subunit G	Interproscan
IPR000283 all species →	Conserved_site	NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site	Interproscan
IPR006963 all species →	Domain	Molybdopterin oxidoreductase, 4Fe-4S domain	Interproscan
IPR001041 all species →	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR019574 all species →	Domain	NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding	Interproscan
IPR050123 all species →	Family	Prokaryotic molybdopterin-containing oxidoreductase	Interproscan
IPR013621 all species →	Domain	Ion transport N-terminal	Interproscan
IPR006656 all species →	Domain	Molybdopterin oxidoreductase	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43105 all species →	RESPIRATORY NITRATE REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016651 all species →	Molecular Function	oxidoreductase activity, acting on NAD(P)H	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0008137 all species →	Molecular Function	NADH dehydrogenase (ubiquinone) activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042773 all species →	Biological Process	ATP synthesis coupled electron transport	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003954 all species →	Molecular Function	NADH dehydrogenase activity	Interproscan
GO:0045272 all species →	Cellular Component	obsolete plasma membrane respiratory chain complex I	Interproscan
GO:0045333 all species →	Biological Process	cellular respiration	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00336	nuoG; NADH-quinone oxidoreductase subunit G	EC:7.1.1.2	Oxidative phosphorylation	ko00190	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Platygyra sinensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Platygyra sinensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →