Gene detail

Detailed information of evm.model.contig_87780.1 in Platygyra sinensis

Genomic Location: contig_87780:468...7659
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01491 all species →	Frataxin_Cyay	Frataxin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002908 all species →	Family	Frataxin/CyaY	Interproscan
IPR036524 all species →	Homologous_superfamily	Frataxin/CyaY superfamily	Interproscan
IPR020895 all species →	Conserved_site	Frataxin conserved site	Interproscan
IPR017789 all species →	Family	Frataxin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16821 all species →	FRATAXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008199 all species →	Molecular Function	ferric iron binding	Interproscan
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0004322 all species →	Molecular Function	ferroxidase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006879 all species →	Biological Process	intracellular iron ion homeostasis	Interproscan
GO:0008198 all species →	Molecular Function	ferrous iron binding	Interproscan
GO:0018283 all species →	Biological Process	iron incorporation into metallo-sulfur cluster	Interproscan
GO:0034986 all species →	Molecular Function	iron chaperone activity	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19054	FXN; frataxin	EC:1.16.3.1	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.