Gene detail

Detailed information of evm.model.contig_87982.3 in Platygyra sinensis

Genomic Location: contig_87982:32755...40120
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_87982.3

CCACCCGGTATCTTGTGGATTTCTCCTAATCACACAACTCAACTTGGTAATGACGTAACGTTGGTATGTACAGTGGTTGGTCGGCCAACACCACGTGTTGTATGGAAGAAAAATGGACGAGTTCTTCAGGATAGTCAATCCACTGGTAACATCACTCTAGTCAACATCTCCCCTGCAGATGGTGGAAGCTATGAGTGTTTGGCGATTAACATTGTGGCAAATGACACGCGAAGAACGCTGCTTAACGTTGTAGGAATCCCGACGAATACTGCCATTAGGAGCAATGTGTCTAGCAATGCTGCCTCTCTTGGTGAAGCTGTTGCGATATGGTGCTCTTCTCATGGCTACCCAAAACCAATTTGTCGAATTTATCATGAAGGTGCCTTGGTTAACATAAATGAAAGTGTTTATGTCATTCGAAACTTTACAGCGGCAGATCAAGGAGAATACACTTGTAATTGCTCCAATGCTGCGGCTGCAGAGGAAGTGAATATTACTCTTTACCTTCATGAATCCCCATATATCCATTCCATTCTTCCTGGTTATCAACTCGTCAATGAAACAGGCAGTTTTGAGATCTTCTGTAATGCGACCGGAAATCCACCTCCTGTGGTAACATGGACACAAATTGACACCCGTGACAACAGCAAAGTCTATTCCACAGGAAAATCACTGAGAGTACAAAATGCTGAAAAATCAGACTTTGGAACCTACCGATGCACGGCTGTGAGCGTGCGTGGGGAAAATGTTTCTGCTTTGGCCACAGTTGGGATGGACAATTTTTCACCAGTGTTTCAAAGCGTTCCACAAAACTTTACCGTGTTGGAACAAGAAAGAAGAAATGTCACAATGTACTGTAATGCCACAGGCCAACCAACAGTAAAACTTTCATGGGTAAGAGTGCGAGATGGCAAAACAGTGGCTTCTGGGAATATTTTGCTCATCTCAGCTGCTGACCGGTCACACCGCGGGAAATATAGATGTGTCGCCGACAATGGAGTTGGAAATCCCCTATCTAAGTCAGCATTTCTTGAAGTACATTATAAACCTTCCTCTACAAGATTAATCACCGATAAAGTGAATGCAGTAGTCCGTGGAAACGGTCGCATTGCACTGTCTTGCGTGACCGATGCCAATCCCCCGCCCAGTCACTACCAGTTTTATCGTGACGGTGTCTACCTCAGAACCAGTCTTACAGGAAAATACGGGATTCACCGAGCCAGATACTATGATGCGGGGAGCTATCTTTGTGTGCCAATCAACCGCCTTGGGACTGGTAGCAACAGCTCTGTCAACATTTACGTCAGTGGTGCTTTCTCTATCATTCACTTTCCACGAAACATGACAGTTAACGAAAGTGCAAGTGTGTCATTTTTCTGCAATGCTACTTCTTATCCTCCATTTGAGCATTTGGTGCCTCACATCTCCTGGACTAAGCTTGGAGACAGCAGCAAAGTGTTTCCATCAGGTCAAACCCTTGTTCTACAGAATGTCAGTCGACATGATGAAGGAACGTACGTGTGTGAAGCTAAGAATGGACTTGGACTGCCTGATACTGCTGCTGCTGTTCTAAACGTGTTGCACAAACCGTACGACACCAAGCTGGAGGCAACAATTCCAGATAACGTTGGAGTGATTAACTCATCAGTCATCTTGAATTGTACCGCAAATGCCAACCCACCTGTTACTGCATATAATATTTATCACAATGGTATCCTAGTGTCTAATGCATCCACTGGTGTCCATAACATCACACGTGCCCTAGCAGAACATAATGGATCATACGTGTGTGTACCTTACAATGATTTTGGACCTGGACAAAGAGCCGCCCTGAACGTCACGTTTGTAGGGCCCTGTGGTGTTAAACGTGTATATGTTTCATGGTCGCCTCTGATCGTAGCAGGAATGTACGCTAAAGCTGGAGAGTGGCCATGGCAGGTACAGTTGGGATACTTTGACGTCACCGAGAGTATCTCTCACATCTGTGGTGCCTCCATCTTGGATCATTACTGGATTGTCACTGCAGCTCACTGTGTTGAAAGTCAATTTAAAGAAAGAGTGGCATCAAATTTTAATGTCACTGTTGGAGAACTTCACAGAGGAATTACGGAAGGAAGCGAACAAAACATCCCAGTTGAAAAGATCATTTTACACAAAAACTTTGATCATCAAAATCTGCAAAATGACATCGCTCTGATGAAACTCAAACAACCGATCCTCTTTGATGCGCATGTCTCGCCGATCTGCCTTCCAGACTTCGATTTTGCTGTCGGTACCACTTGTTACGTCACCGGATGGGGGCTGTCTGGACCTTTGGGTTCTTCATCAGACATACTCCAGGAGACTATTGCCCCTTTAATGAACCACACAATTTGCAAAAATCATTACACAGGAATAAACCCGGTGACGTCGCACATGCGCTGTGCAGGGACCCTGGGTCAGAGTCAAGGTACATGTAAAGGAGATAGCGGTGGACCGCTGGCTTGTGAACGAAATGGCCGTTGGTATTTAATGGGTGTTACAAGTTGGACAAACGGTGGCTGCATGAATAACGGCGACCCAGGAGTATTTACTGATATTTTGTATTTTAGAAACTGGGTTGAGGAAGTTATGAGAAACAATACGAGGACGCTAGTGTAA

Transcript

evm.model.contig_87982.3

ttcCACCCGGTATCTTGTGGATTTCTCCTAATCACACAACTCAACTTGGTAATGACGTAACGTTGGTATGTACAGTGGTTGGTCGGCCAACACCACGTGTTGTATGGAAGAAAAATGGACGAGTTCTTCAGGATAGTCAATCCACTGGTAACATCACTCTAGTCAACATCTCCCCTGCAGATGGTGGAAGCTATGAGTGTTTGGCGATTAACATTGTGGCAAATGACACGCGAAGAACGCTGCTTAACGTTGTAGGAATCCCGACGAATACTGCCATTAGGAGCAATGTGTCTAGCAATGCTGCCTCTCTTGGTGAAGCTGTTGCGATATGGTGCTCTTCTCATGGCTACCCAAAACCAATTTGTCGAATTTATCATGAAGGTGCCTTGGTTAACATAAATGAAAGTGTTTATGTCATTCGAAACTTTACAGCGGCAGATCAAGGAGAATACACTTGTAATTGCTCCAATGCTGCGGCTGCAGAGGAAGTGAATATTACTCTTTACCTTCATGAATCCCCATATATCCATTCCATTCTTCCTGGTTATCAACTCGTCAATGAAACAGGCAGTTTTGAGATCTTCTGTAATGCGACCGGAAATCCACCTCCTGTGGTAACATGGACACAAATTGACACCCGTGACAACAGCAAAGTCTATTCCACAGGAAAATCactgagagtacaaaatgctgAAAAATCAGACTTTGGAACCTACCGATGCACGGCTGTGAGCGTGCGTGGGGAAAATGTTTCTGCTTTGGCCACAGTTGGGATGGACAATTtttcacCAGTGTTTCAAAGCGTTCCACAAAACTTTACCGTGTTGGAACAAGAAAGAAGAAATGTCACAATGTACTGTAATGCCACAGGCCAACCAACAGTAAAACTTTCATGGGTAAGAGTGCGAGATGGCAAAACAGTGGCTTCTGGGAATATTTTGCTCATCTCAGCTGCTGACCGGTCACACCGCGGGAAATATAGATGTGTCGCCGACAATGGAGTTGGAAATCCCCTATCTAAGTCAGCATTTCTTGAAGTACATTATAAACCTTCCTCTACAAGATTAATCACCGATAAAGTGAATGCAGTAGTCCGTGGAAACGGTCGCATTGCACTGTCTTGCGTGACCGATGCCAATCCCCCGCCCAGTCACTACCAGTTTTATCGTGACGGTGTCTACCTCAGAACCAGTCTTACAGGAAAATACGGGATTCACCGAGCCAGATACTATGATGCGGGGAGCTATCTTTGTGTGCCAATCAACCGCCTTGGGACTGGTAGCAACAGCTCTGTCAACATTTACGTCAGTGGTGCTTTCTCTATCATTCACTTTCCACGAAACATGACAGTTAACGAAAGTGCAAGTGTGTCATTTTTCTGCAATGCTACTTCTTATCCTCCATTTGAGCATTTGGTGCCTCACATCTCCTGGACTAAGCTTGGAGACAGCAGCAAAGTGTTTCCATCAGGTCAAACCCTTGTTCTACAGAATGTCAGTCGACATGATGAAGGAACGTACGTGTGTGAAGCTAAGAATGGACTTGGACTGCCTGATACTGCTGCTGCTGTTCTAAACGTGTTGCACAAACCGTACGACACCAAGCTGGAGGCAACAATTCCAGATAACGTTGGAGTGATTAACTCATCAGTCATCTTGAATTGTACCGCAAATGCCAACCCACCTGTTACTGCATATAATATTTATCACAATGGTATCCTAGTGTCTAATGCATCCACTGGTGTCCATAACATCACACGTGCCCTAGCAGAACATAATGGATCATACGTGTGTGTACCTTACAATGATTTTGGACCTGGACAAAGAGCCGCCCTGAACGTCACGTTTGTAGGGCCCTGTGGTGTTAAACGTGTATATGTTTCATGGTCGCCTCTGATCGTAGCAGGAATGTACGCTAAAGCTGGAGAGTGGCCATGGCAGGTACAGTTGGGATACTTTGACGTCACCGAGAGTATCTCTCACATCTGTGGTGCCTCCATCTTGGATCATTACTGGATTGTCACTGCAGCTCACTGTGTTGAAAGTCAATTTAAAGAAAGAGTGGCATCAAATTTTAATGTCACTGTTGGAGAACTTCACAGAGGAATTACGGAAGGAAGCGAACAAAACATCCCAGTTGAAAAGATCATTTTACACAaaaactttgatcatcaaaatctGCAAAATGACATCGCTCTGATGAAACTCAAACAACCGATCCTCTTTGATGCGCATGTCTCGCCGATCTGCCTTCCAGACTTCGATTTTGCTGTCGGTACCACTTGTTACGTCACCGGATGGGGGCTGTCTGGACCTTTGGGTTCTTCATCAGACATACTCCAGGAGACTATTGCCCCTTTAATGAACCACACAATTTGCAAAAATCATTACACAGGAATAAACCCGGTGACGTCGCACATGCGCTGTGCAGGGACCCTGGGTCAGAGTCAAGGTACATGTAAAGGAGATAGCGGTGGACCGCTGGCTTGTGAACGAAATGGCCGTTGGTATTTAATGGGTGTTACAAGTTGGACAAACGGTGGCTGCATGAATAACGGCGACCCAGGAGTATTTactgatattttgtattttagaaACTGGGTTGAGGAAGTTATGAGAAACAATACGAGGACGCTAGTGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13895 all species →	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR050831 all species →	Family	Carcinoembryonic antigen-related cell adhesion	Interproscan
IPR018114 all species →	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR033116 all species →	Active_site	Serine proteases, trypsin family, serine active site	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44427 all species →	CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_87982.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.