Gene detail

Detailed information of evm.model.contig_88282.5 in Platygyra sinensis

Genomic Location: contig_88282:28593...41040
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_88282.5

ATGAAGACACTGAAAGCAAGGGAAAAGCGCAGAGCAGCCAAAGCTAAAGAATTGGAGAGGAGGGAAGGGTCATCTAGACGGGAAGGCTCAGAAAGAAGGAAAAGGGATGGAAGTCTTCGAAAAGATGGGGCAAGTAACCATGATGGTGATGGCTCATTACTGAGAAGAGAAAGCAGTGGAAGAAAGGATGGAGTGACAAGAGAAGGTTCATCGTCACGGCGACATGGGAGTAGAGAAAAGAGAGAAAGAACAAGCTCAAGAGAACATAGAAAACATGGTGCAGAGGCTAGTGCACAGATAAAAGCAGTGTTTGAGTCTGAACAGTACAGTGCATATATGAAGCCAAGCCATGCTAATGAAACTACCCCAGAGGATGCTGCGCCAGTAGAAAATGGAACAGAGAGTAAGCCTGCTGATGACAAGACAACTGAGGCTGTTGACGGAGTTTCTCTGGAAGCAGGTGAAGATGCGGCATGTGCTGCTGACAGTGACTTAGATAACCGCAAGTCACCTGAACTTCCTATTCCAGAGCTTCCAGCCATGCAGGACATACCCTTACCTGATGACGACGACAAAAAAGAGAATGGAACAGATGACGAGGGACAGTTTACGCCATCAGGGACATTATCACGACATGGCAATCTAGATGACACCTGTGAGGACCACCTCAGTCCATCAGGGACCATCGAGAGAGCAAGACAAGCGGTGGAAAGTGCATCCAGGTGCATTTTAGCCAACAGAGCTGCAGCACAGAACAGAGAAGATGATTCTGTCTTTGTTGAGAGTGGAAGATCGATTGCTACTAACAAACAAGGACTTCAAGATAGTCTGGACGACTCTCTGAGTATAAAACTAAGAGCAGGAGGCATGCCAGCCACTACAGCACGGCTAGTAGAAGCATGTGCTCCACCTTCCCTTAATGAGAGCCAACTGAGTATTCGGTCACTCAGGCATCATCGGCAAGTGAGCGACAGTGTACTGAAGGACCTGAGACGCGATGACGATGACGACGATGATGATGACGAAGAGCAGGAGACAAAGTCAGTGGGAACACCAAGTACTTTGCCACGGCTTAGTCGACCATCTTCTATTGCGTCACCAGCTACAGGGCCATCCAAACACAGTACCTTGGAACGTTCACATTCCATCCCTGGTTCTAAGCCTCCGTTAATGCGAGCTCTTGGTGCATATGAGGAGTATTTTAGTCATCACAAGAAAGGTGTCTTTAGGCGGAAAAGAATTTCTTTAGCAAGCATGCTGTCCTGGTCAAAGGTGCCAATCAAGAAGCCCCTTATCCTGATACAGGATAGGCAATTGAAGAAGGATGCCATCGATACTTTTAAACTCATTCTTGGTTACATGGGCGACCGAACAATCAAAGGCAAGTCAACTGAGAAGCTGGCTCTGGAACTCACTACTAAGGGCTGGAACACGCCAGTGTTGAGAGACGAGATTTATCTACAGCTGTGCAAACAGACCACGGATAATTTTCGACCAGAGAGCTTACGTTGTGGCTGGGAGCTCATGGCTATCTGCCTCGCTTTGTTTCCGCCCTCGACCAAGTTCCATTCGTACTTGGAGGGTTATATCAACAAACACTTCCAAGATGCTGATTGGAAAGAGATACCCGTGACTCAATATGCTCGACATTGCTCTGTGAGACTAAAGAGAATCTCTAGAACTGGTGCAAAGAGAGGCCTGAGGAAACCAAGTATTGAAGAAATTCAACAAGCTAAATCCTCTGTTTTTCACCCGTCCATGTTTGGTGCTACTCTGGATGATATCATGGAGGCACAAGCCAAGCGATTCCCTTCACTTAAGCTACCGTGGATTTTACCCACTCTTGCCGAGGCCGTGTTGCAACACCAAGGCGCCTCAACAGAAGGTATTTTCAGGGTCCCTGGGGATATCGACGAGGTGAACTCTCAAAAAGTCAAACTGGACAGATGGGAAGTTCCCACGAGTATCACGGACCCACACGTACCAGCATCACTACTCAAGCTTTGGTTTAGGGAACTTCACGAACCTCTCATACCGGAACAATACTAA

Transcript

evm.model.contig_88282.5

ATGAAGACACTGAAAGCAAGGGAAAAGCGCAGAGCAGCCAAAGCTAAAGAATTGGAGAGGAGGGAAGGGTCATCTAGACGGGAAGGCTCAGAAAGAAGGAAAAGGGATGGAAGTCTTCGAAAAGATGGGGCAAGTAACCATGATGGTGATGGCTCATTACTGAGAAGAGAAAGCAGTGGAAGAAAGGATGGAGTGACAAGAGAAGGTTCATCGTCACGGCGACATGGGAGTAgagaaaagagagaaagaacAAGCTCAAGAGAACATAGAAAACATGGTGCAGAGGCTAGTGCACAGATAAAAGCAGTGTTTGAGTCTGAACAGTACAGTGCATATATGAAGCCAAGCCATGCTAATGAAACTACCCCAGAGGATGCTGCGCCAGTAGAAAATGGAACAGAGAGTAAGCCTGCTGATGACAAGACAACTGAGGCTGTTGACGGAGTTTCTCTGGAAGCAGGTGAAGATGCGGCATGTGCTGCTGACAGTGACTTAGATAACCGCAAGTCACCTGAACTTCCTATTCCAGAGCTTCCAGCCATGCAGGACATACCCTTACCTGATGACGACGACAAAAAAGAGAATGGAACAGATGACGAGGGACAGTTTACGCCATCAGGGACATTATCACGACATGGCAATCTAGATGACACCTGTGAGGACCACCTCAGTCCATCAGGGACCATCGAGAGAGCAAGACAAGCGGTGGAAAGTGCATCCAGGTGCATTTTAGCCAACAGAGCTGCAGCACAGAACAGAGAAGATGATTCTGTCTTTGTTGAGAGTGGAAGATCGATTGCTACTAACaaacaagGACTTCAAGATAGTCTGGACGACTCTCTGAGTATAAAACTAAGAGCAGGAGGCATGCCAGCCACTACAGCACGGCTAGTAGAAGCATGTGCTCCACCTTCCCTTAATGAGAGCCAACTGAGTATTCGGTCACTCAGGCATCATCGGCAAGTGAGCGACAGTGTACTGAAGGACCTGAGAcgcgatgacgatgacgacgatgatgatgacgaagaGCAGGAGACAAAGTCAGTGGGAACACCAAGTACTTTGCCACGGCTTAGTCGACCATCTTCTATTGCGTCACCAGCTACAGGGCCATCCAAACACAGTACCTTGGAACGTTCACATTCCATCCCTGGTTCTAAGCCTCCGTTAATGCGAGCTCTTGGTGCATATGAGGAGTATTTTAGTCATCACAAGAAAGGTGTCTTTAGGCGGAAAAGAATTTCTTTAGCAAGCATGCTGTCCTGGTCAAAGGTGCCAATCAAGAAGCCCCTTATCCTGATACAGGATAGGCAATTGAAGAAGGATGCCATCGATACTTTTAAACTCATTCTTGGTTACATGGGCGACCGAACAATCAAAGGCAAGTCAACTGAGAAGCTGGCTCTGGAACTCACTACTAAGGGCTGGAACACGCCAGTGTTGAGAGACGAGATTTATCTACAGCTGTGCAAACAGACCACGGATAATTTTCGACCAGAGAGCTTACGTTGTGGCTGGGAGCTCATGGCTATCTGCCTCGCTTTGTTTCCGCCCTCGACCAAGTTCCATTCGTACTTGGAGGGTTATATCAACAAACACTTCCAAGATGCTGATTGGAAAGAGATACCCGTGACTCAATATGCTCGACATTGCTCTGTGAGACTAAAGAGAATCTCTAGAACTGGTGCAAAGAGAGGCCTGAGGAAACCAAGTATTGAAGAAATTCAACAAGCTAAATCCTCTGTTTTTCACCCGTCCATGTTTGGTGCTACTCTGGATGATATCATGGAGGCACAAGCCAAGCGATTCCCTTCACTTAAGCTACCGTGGATTTTACCCACTCTTGCCGAGGCCGTGTTGCAACACCAAGGCGCCTCAACAGAAGGTATTTTCAGGGTCCCTGGGGATATCGACGAGGTGAACTCTCAAAAAGTCAAACTGGACAGATGGGAAGTTCCCACGAGTATCACGGACCCACACGTACCAGCATCACTACTCAAGCTTTGGTTTAGGGAACTTCACGAACCTCTCATACCGGAACAATACTAA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003516 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00784 all species →	MyTH4	MyTH4 domain	Family	Interproscan
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR000857 all species →	Domain	MyTH4 domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR038185 all species →	Homologous_superfamily	MyTH4 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45876 all species →	FI04035P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_88282.5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.