Gene detail

Detailed information of evm.model.contig_88527.1 in Platygyra sinensis

Genomic Location: contig_88527:38...13525
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_88527.1

ATGCTTAATCTTGCTGCCAGCGAAGGTCATGTTCCCAGAAAAGCGTCCGCTCTTCGTAACTGGCTTTTCCAAGTAAGCAAGGATGGAAAGAACTGGACAACATTGTACACCCATACAGACGACAATTCTCTCAATGAACCCGGGTCCACAGCTTCGTGGCCGTTAGAGCCTCCGTCAGACCAAGAGGGGTGGCGATATGTGCGTTTGCAGCAAGCTGGCAAGAATGCCAGTGGTCAGACTCATTATCTGTCTCTGTCAGGATTTGAAGTGTATGGAACAGTATTAGGAGCTGTAGAGGAACCCTTAGGTCCAGAGCAATCATCTTCCAAGGTTGTCACTGCCGGCGAGAAGCTAGCCAAATCACTGAAACCCTGCTGGTCCCTGTGTCCTGGTAAAGCTGCACGCGAGGTGGAAGCTGCCTTGCGCCGCCAACGCCGCCTCATTCGCTCGCAGATGCTAAAACACCTGAACGTGGGTAGCAAAGTGGTCCGGGGGATGGACTGGAAGTGGAAAGACCAGGATGGAAGTCCCCCCGGTGAAGGCCTTGTCACTGGGGAACTGCAGAACGGTTGGGTCGAGGTGGCATGGTCAAATGGTACTTCTAACTCTTATCGTATGGGTGCTGATGGCAAGTTTGATTTGAGAGTGGTAGACCCAAGTCCTTCCTCAGAGACTGCAGGTGAACTTTCATCGTCCAGCCCTGGTGAAGAAGGACGTTCCGAAGAGAGATCCTCTACAGAGGAGCCTGAAGTTGTATCTCCGGAGAAACCTCAGCAGGAAAGTTCCTTGACGTCCCAGACTGTTGATGAATCTAGCGAGGTGTTGGTGGAAGCCGTGCGAGTTGAGGAGATACCCGACGAAGGAATATTTACCTCGGATGACATTATTGACTCGTCTGGAAATGCAGTAGTGGTATCAGAGGAAGTTGCAGACAGCACGGTGGTGGTGCCAAATGCTGATGAACCGAAGGAAACTGTCGGTGAAATAGAAGAGGTAACGGAAGATGAGGTACTGCCGCAGGCGAGGCCTCCCTCGCTACCACCCTCCAGGCCCAACATCTCGTCTCCTAACATCTCAGTGGGAGAAACTGCAAGAAGGTTGTTAAGCTCAGCCGTGAACGCAGCCAACTCGCCAGGCAGCAGACTGACCAGAGCCTCTGACCTGGATATGTACGTGGCCATGAGAGGCTCGGGACTGCTGACGGGACTGGAGGATGATTACGATCTTCCTGAACCCTCTGACGATGATGATGACGATGACGACGATGATGATGATGACGAGAACGACGAAGAGAACGAAGATGATTACGAGGTTGAAGAGGAGCCCGAGTCACGTGGTGGGCGTCGCCGCACGTGGGATGACGAGCACGTGCTTAAGAGGCAATTCTCTGCTCTGGTTCCTGCGTTTGACCCGAGACCAGGAAGAACCAACATTGCACAAACACAGGATATTGTAATTCCTGCGCCAGGATCTTTAGAGAGCTCTTCGACGGAAATGACCGCAGCAACACTCGAACCTCACCTTGTGTTGACTCTTAAAGGACCTGCATCGCTTACGCAGTCGGAGGTCGAGGTGTGTTTAGATGATCCCAAGGCCACCATTTTCTCCTATGTGCAAAAGGTTGCATTGGCTGCTGGGATATCTAAGAATGAGCGAGTGCGAAGAGTCTGGGAACCAACCTACACTATCAGCTATCGAGAGGTTCACGACCCCGAGCAAGCGCAACGATCAAGTGAAACAAAGGAACACTTGGAAACAACGGTTCACTGGACTACATCGTATGTTGAGCGCTATCTAGGAACAGATGACCTGCCTAAGTCCGAAGTGATCTCGTTCCTTCAGAGGCATGCTGATGCTGCGTTTTTGAGAAAATGGAAGCTGTCAGGGGTGCCTAAGAGCATACGAAAGAACAGAAATTGCTCTCAACTCGTGGCAGCTTACAAGGAGTTTTGTAATACTCTAGATTCCTCCCCACCCACCTCCCCTGGTCTTGACAAACCGGAAGTTCAACAGGAGGTAAAACCGGAAGTTCCAAAAGACAAGAGCTCAACTGTCCCCACCCCAGTGGCTGTTAATGACATGTCCGCTATTCAGGACATTCTGCAGCTCCTGAAAGTCCTCTACAGCGTGTCCACCAGTTCTGCGTACGACTTTGGAGATGGTAATGAGAAGTACGGATTCATCGTAAGCAATGAAGATTTTACAAGTAAAAAACTCACGACCAAACTAATGCAACAGATTCAGGATCCATTAGTGCTGTCCAGTAATGCGTTACCAGAATGGAGTGGAATATTAACCAGCACGTTTCCATTCTTATTTCCTTTTGAAACAAGACAGCTTTATTTTTCATGCACGGCTTTTGGAAGCTCACGGGCAATCGTATGGCTGCAAAACAAACGTGACGTAGCGCTGGAACGAAGCCGTCCTCCAAGCCACAGGCGAGAAGAGCAACACGAGTTCAGAGTGGGCAGACTAAAACACGAGAGAGTAAAAGTACCACGAGGAGATGAGTTGTTAGACTGGGCAATGAGTGTGCTGAAGTTCCATGCTGAACGCAAGTCTGTGTTGGAGGTTGAGTTTGAGGATGAGGAAGGCACAGGGTTGGGGCCATCACTTGAGTTTTACGCACTTGTGGCGGCCGAGCTTCAACGGAAGAGTCTGGGCATGTGGATTTGTGATGACGTCATAGTGGACGAGACTGCGAGAGAGGTGGATATTGGACATGGAATTCGTCCAAGGGGTTATTACGTGCAACGCGCTGGAGGCCTCTTTCCAGCGCCCCTCCCTCAGGATGCCCCTGATACTGAGAGGGTAGCAAAGCTGTTCTATATCCTTGGTGTTTTCCTAGCTAAGAGCTTGCAGGACAGTCGATTAGTAGACATCCCTCTGTCGCTATCGTTTTTAAAACTCTTGGCTTGTAGTTCACTGTCATCAACCAGCAACAGTGCACTGTCACATAGTCGCAGCAACTTGCAATTAATCGATGACGCTTCGTGTTCGCTCGATGATATAGTCGAGTGCTCGGACACGACGAACGAGCTAGATCAACCTCAGCCGAGCTTAGAGGAGAACGAAAATGCGATCAACAAATTAGACTGGGAATCCAGCAAAGAAAGAGAACTTATCGAAGAAGAGGAAGAACTGTCCAAAGAAGAGAATTCTGAACTGAGTAAAACAAAAGAAAGTGTTGAAGACATTCCTTTAACACCGTTAACGAACTCTTGGTTTGCGGGAATCTTGGATGACAGTGATATGGACATTGTGGATCCGCACAGAGCGACCTTTCTAAAACAACTCCAAGAGTTAGTCGCCAGGAAAAATGACATTCTTAAAGACGATTTGCTAACGACTAATGAGAAGAAAGCCAAAATATCGCAGTTGAAGTTGAAGACAGCTCATGGTGTTGAATGTAGTGTTGATGATTTAGGCTTAACTTTCCAATTCTCGCCGTCTTCTAAGGTATACGGGTTCAGCGAAGTTGATCTGACCCAAGATGGTTCAGAAAAGGTGCTAGCAACAGAGAACGCTGAGGAGTATATCAAGCTTGTGAAGGAGTTCTGTTTATATACTGGAGTGCAACGACAGTTAGATGCATTTAGAGACGGGTTTAACTCTGTGTTTCCGATGGAGAAGCTTGGTCCGTTCACTCCAGAGGAGCTGCAACTGATGCTGAGTGGAGAACAAGTTCCTCAGTGGACCAGAGAAGACATCATGAACTACACTGACCCCAAGTTTGGATACACTCGAGACACGCCAGGGTTTCAGAAATTTGTCAACGTGCTGGTCAGCATGAGCGGCGACGAGAGGAAGGCGTTTCTCCAGTTCACCACAGGCTGTTCGTCTCTACCTCCTGGTGGCCTCGCCAATCTTCATCCTCGCCTGACTGTTGTGCGTAAGGAGAGTGACGGGGATGGTTCTTTTCCTTCTGTCAACACGTGCGTACATTACCTGAAGCTGCCTGAGTATTCCTCTGAAGAAGTCATGCGAGAGAAATTACTAGCAGCTACAAGGGAGAAGGGATTTCACTTGAATTAA

Transcript

evm.model.contig_88527.1

ATGCTTAATCTTGCTGCCAGCGAAGGTCATGTTCCCAGAAAAGCGTCCGCTCTTCGTAACTGGCTTTTCCAAGTAAGCAAGGATGGAAAGAACTGGACAACATTGTACACCCATACAGACGACAATTCTCTCAATGAACCCGGGTCCACAGCTTCGTGGCCGTTAGAGCCTCCGTCAGACCAAGAGGGGTGGCGATATGTGCGTTTGCAGCAAGCTGGCAAGAATGCCAGTGGTCAGACTCATTATCTGTCTCTGTCAGGATTTGAAGTGTATGGAACAGTATTAGGAGCTGTAGAGGAACCCTTAGGTCCAGAGCAATCATCTTCCAAGGTTGTCACTGCCGGCGAGAAGCTAGCCAAATCACTGAAACCCTGCTGGTCCCTGTGTCCTGGTAAAGCTGCACGCGAGGTGGAAGCTGCCTTGCGCCGCCAACGCCGCCTCATTCGCTCGCAGATGCTAAAACACCTGAACGTGGGTAGCAAAGTGGTCCGGGGGATGGACTGGAAGTGGAAAGACCAGGATGGAAGTCCCCCCGGTGAAGGCCTTGTCACTGGGGAACTGCAGAACGGTTGGGTCGAGGTGGCATGGTCAAATGGTACTTCTAACTCTTATCGTATGGGTGCTGATGGCAAGTTTGATTTGAGAGTGGTAGACCCAAGTCCTTCCTCAGAGACTGCAGGTGAACTTTCATCGTCCAGCCCTGGTGAAGAAGGACGTTCCGAAGAGAGATCCTCTACAGAGGAGCCTGAAGTTGTATCTCCGGAGAAACCTCAGCAGGAAAGTTCCTTGACGTCCCAGACTGTTGATGAATCTAGCGAGGTGTTGGTGGAAGCCGTGCGAGTTGAGGAGATACCCGACGAAGGAATATTTACCTCGGATGACATTATTGACTCGTCTGGAAATGCAGTAGTGGTATCAGAGGAAGTTGCAGACAGCACGGTGGTGGTGCCAAATGCTGATGAACCGAAGGAAACTGTCGGTGAAATAGAAGAGGTAACGGAAGATGAGGTACTGCCGCAGGCGAGGCCTCCCTCGCTACCACCCTCCAGGCCCAACATCTCGTCTCCTAACATCTCAGTGGGAGAAACTGCAAGAAGGTTGTTAAGCTCAGCCGTGAACGCAGCCAACTCGCCAGGCAGCAGACTGACCAGAGCCTCTGACCTGGATATGTACGTGGCCATGAGAGGCTCGGGACTGCTGACGGGACTGGAGGATGATTACGATCTTCCTGAACCCtctgacgatgatgatgacgatgacgacgatgatgatgatgacgagaACGACGAAGAGAACGAAGATGATTACGAGGTTGAAGAGGAGCCCGAGTCACGTGGTGGGCGTCGCCGCACGTGGGATGACGAGCACGTGCTTAAGAGGCAATTCTCTGCTCTGGTTCCTGCGTTTGACCCGAGACCAGGAAGAACCAACATTGCACAAACACAGGATATTGTAATTCCTGCGCCAGGATCTTTAGAGAGCTCTTCGACGGAAATGACCGCAGCAACACTCGAACCTCACCTTGTGTTGACTCTTAAAGGACCTGCATCGCTTACGCAGTCGGAGGTcgaggtgtgtttagatgatcCCAAGGCCACCATTTTCTCCTATGTGCAAAAGGTTGCATTGGCTGCTGGGATATCTAAGAATGAGCGAGTGCGAAGAGTCTGGGAACCAACCTACACTATCAGCTATCGAGAGGTTCACGACCCCGAGCAAGCGCAACGATCAAGTGAAACAAAGGAACACTTGGAAACAACGGTTCACTGGACTACATCGTATGTTGAGCGCTATCTAGGAACAGATGACCTGCCTAAGTCCGAAGTGATCTCGTTCCTTCAGAGGCATGCTGATGCTGCGTTTTTGAGAAAATGGAAGCTGTCAGGGGTGCCTAAGAGCATACGAAAGAACAGAAATTGCTCTCAACTCGTGGCAGCTTACAAGGAGTTTTGTAATACTCTAGATTCCTCCCCACCCACCTCCCCTGGTCTTGACAAACCGGAAGTTCAACAGGAGGTAAAACCGGAAGTTCCAAAAGACAAGAGCTCAACTGTCCCCACCCCAGTGGCTGTTAATGACATGTCCGCTATTCAGGACATTCTGCAGCTCCTGAAAGTCCTCTACAGCGTGTCCACCAGTTCTGCGTACGACTTTGGAGATGGTAATGAGAAGTACGGATTCATCGTAAGCAATGAAgattttacaagtaaaaaacTCACGACCAAACTAATGCAACAGATTCAGGATCCATTAGTGCTGTCCAGTAATGCGTTACCAGAATGGAGTGGAATATTAACCAGCACGTTTCCATTCTTATTTCCTTTTGAAACAAGACAGCTTTATTTTTCATGCACGGCTTTTGGAAGCTCACGGGCAATCGTATGGCTGCAAAACAAACGTGACGTAGCGCTGGAACGAAGCCGTCCTCCAAGCCACAGGCGAGAAGAGCAACACGAGTTCAGAGTGGGCAGACTAAAACACGAGAGAGTAAAAGTACCACGAGGAGATGAGTTGTTAGACTGGGCAATGAGTGTGCTGAAGTTCCATGCTGAACGCAAGTCTGTGTTGGAGGTTGAGTTTGAGGATGAGGAAGGCACAGGGTTGGGGCCATCACTTGAGTTTTACGCACTTGTGGCGGCCGAGCTTCAACGGAAGAGTCTGGGCATGTGGATTTGTGATGACGTCATAGTGGACGAGACTGCGAGAGAGGTGGATATTGGACATGGAATTCGTCCAAGGGGTTATTACGTGCAACGCGCTGGAGGCCTCTTTCCAGCGCCCCTCCCTCAGGATGCCCCTGATACTGAGAGGGTAGCAAAGCTGTTCTATATCCTTGGTGTTTTCCTAGCTAAGAGCTTGCAGGACAGTCGATTAGTAGACATCCCTCTGTCGCTATCGTTTTTAAAACTCTTGGCTTGTAGTTCACTGTCATCAACCAGCAACAGTGCACTGTCACATAGTCGCAGCAACTTGCAATTAATCGATGACGCTTCGTGTTCGCTCGATGATATAGTCGAGTGCTCGGACACGACGAACGAGCTAGATCAACCTCAGCCGAGCTTAGAGGAGAACGAAAATGCGATCAACAAATTAGACTGGGAATCCAGCAAAGAAAGAGAACTTATCGAAGAAGAGGAAGAACTGTCCAAAGAAGAGAATTCTGAACtgagtaaaacaaaagaaagtgttgaaGACATTCCTTTAACACCGTTAACGAACTCTTGGTTTGCGGGAATCTTGGATGACAGTGATATGGACATTGTGGATCCGCACAGAGCGACCTTTCTAAAACAACTCCAAGAGTTAGTCGCCAGGAAAAATGACATTCTTAAAGACGATTTGCTAACGACTAATGAGAAGAAAGCCAAAATATCGCAGTTGAAGTTGAAGACAGCTCATGGTGTTGAATGTAGTGTTGATGATTTAGGCTTAACTTTCCAATTCTCGCCGTCTTCTAAGGTATACGGGTTCAGCGAAGTTGATCTGACCCAAGATGGTTCAGAAAAGGTGCTAGCAACAGAGAACGCTGAGGAGTATATCAAGCTTGTGAAGGAGTTCTGTTTATATACTGGAGTGCAACGACAGTTAGATGCATTTAGAGACGGGTTTAACTCTGTGTTTCCGATGGAGAAGCTTGGTCCGTTCACTCCAGAGGAGCTGCAACTGATGCTGAGTGGAGAACAAGTTCCTCAGTGGACCAGAGAAGACATCATGAACTACACTGACCCCAAGTTTGGATACACTCGAGACACGCCAGGGTTTCAGAAATTTGTCAACGTGCTGGTCAGCATGAGCGGCGACGAGAGGAAGGCGTTTCTCCAGTTCACCACAGGCTGTTCGTCTCTACCTCCTGGTGGCCTCGCCAATCTTCATCCTCGCCTGACTGTTGTGCGTAAGGAGAGTGACGGGGATGGTTCTTTTCCTTCTGTCAACACGTGCGTACATTACCTGAAGCTGCCTGAGTATTCCTCTGAAGAAGTCATGCGAGAGAAATTACTAGCAGCTACAAGGGAGAAGGGATTTCACTTGAATTAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18410 all species →	BTHB	Basic tilted helix bundle domain	Domain	Interproscan
PF07738 all species →	Sad1_UNC	Sad1 / UNC-like C-terminal	Family	Interproscan
PF06701 all species →	MIB_HERC2	Mib_herc2	Domain	Interproscan
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041200 all species →	Domain	FKBP3, basic tilted helix bundle domain	Interproscan
IPR045322 all species →	Family	E3 ubiquitin-protein ligase HECTD1/TRIP12-like	Interproscan
IPR012919 all species →	Domain	SUN domain	Interproscan
IPR010606 all species →	Domain	Mib-herc2	Interproscan
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR037252 all species →	Homologous_superfamily	Mib/herc2 domain superfamily	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45670 all species →	E3 UBIQUITIN-PROTEIN LIGASE TRIP12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016607 all species →	Cellular Component	nuclear speck	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070534 all species →	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_88527.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.