Gene detail

Detailed information of evm.model.contig_88603.2 in Platygyra sinensis

Genomic Location: contig_88603:9332...48549
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_88603.2

ATGAGATCGGTTATCCTGATGTCAGCCACTATTGAAAGTGATCTATTCTCAATGTACTTTGCCGTTCCTGTGCGTGGCAGAGTGGAGGGAGCCCCTGTTGTCAGTGTAGATGGGAAGTCCTTCCCTGTAGTGGAAAGTTATCTTGAAGACCTTAAAGATATTGGAATGCTCCCCGATGTTACTCTTGAAGAACCAGGTATTGACAAAGTGGGATATGAGTTGGCAGCTCGTCTTGTATACCATCTTGATGAACTGGAGAGAACCAGCAACACAAGGCAAGGCTCTCGTGGGACTGTCCTCATGTTTCTACCTGGTTATTTTGAAATTGAACAGATGGATCATGTCTTAGATGAGATCTGTACAGATTTGATAAATCACTTGTACATGAATCTGCAGCTTGTGTTGCTTCATGGACATCTGCTCTCCCTGAAGGAGATTTTAAACCATAACAGACTGGCCTGCAATGTCCTTACCAGGCATGAGAGTATACTTCCACTGCATTCCCGAATCACAACCCAAGAACAAGGAAGTGTCTTCCAAAAACCACCAGAGGGTTTCAGAAAGGTCATCTTGGCTACAAACATTGCAGAAAGTTCAATCACTGTTCCAGACATCAAATATGTCATTGATTTTTGTCTGGAGAAATGCCTAATATGTGATCCAGAGACAAACTTCCAGAGTTTACGGCCACAGTGGGCATCCAAAGCCAATTGTACTCAGCGCAAAGGTCGCGCTGGTCGTGTGTCTACAGGAATATGCTACAGAATGGTAACCAGGGAGTTTTATCAATCATGCCTTCCACAATTTGGTATTCCTGAGATGCAGAGATGTCCACTAGAACAAGTTGTGTTGAAAGTGAAGCTCTTGGATATTGGGCCTCCCAAGGCTGTACTAAGACTAGCTTTACAGCCTCCAGATTCAGATGACATTGAGCGGACGGTTCTGCTATTGAAGCAGGTGGGTGCCCTGACCATTGTTATGAAGAATGGTACTATTAATCCATGTGATGGCGAGCTGACATTTGTAGGCAAAGTGCTGGGAAGTCTGCCAATTGATGTTCACCTTGGAAAGCTGTTGGTGTTTGCATATGTTTATGGTTGCCTGGAAGAATGCCTTGTTATCAGTGCTTCATTGTCTTTGCAGTCTTTCTTTGCAAACCCCTTTAAGAGGAATTTGAAGCTTACAGAGTTTACTGCATTTTTCGTTTTTCACAGTAAGAAGATGGCCTGGTGTGATTATTCACACAGTGACTGCATTGCAGTTCTCAATGCCTTCAAGGAGTGGAGCATGTTGAAGAGGCGAAAAGGATTCACAAATGGAGAATTTAACTGGAGTCAGGAGAACATGATTCAGCTGGGTCGCATAAGAGAGGTTGAGCAGCTTGTGGAAGAATTGACTGAAAGACTCAAGCAGCTTAATTTGCGAACAATAAGACCTTTGCATCAAAAGGCCACCACTCAGGAGTCTCTTCTCATTTTAAAGCTTGTGATCTGTGGTGCATTCTATCCAAACTACTTTACATCAAGTGATATTGATGAAGCTGAAGTCATGAAAGCCATGTCTGGTCATGATCCTTTTACCACTGTGATGGTCAGGAACATGCCTCCCCATGGTGCTCTGTACCGGTCAGCAATTGCAAGAATGTTCAGGCAGTGTGGTAAAGGCAAAGCTCTGTATTTTGAGGAAAGCAGGGCCTACATTGAATTTGAAAAACCACGTTTTGCTGACCAAGGCTTGGAGTCGAATGCAATTGTCCCAGCTGTCTACAAAGCCATTAAAATGAGACAGCTCAGGAAACCTCTCAGTCTTTTCATCTCTGAAGCAAAAAATCAACAGATGGACAGGCTGATGGAACAGAGGAGGATGGCTACACTTCTTACGTCAAGAGGTCCAGGTAGTGTGGAGTTGATGGAAGAACCACGACAGGTTAACCTCCCTCAGAAGGGCTATTTAGAAATTGTGACCTCAGTGGTGTTAAACGCTGGCCACTTCTGGGCTCAGAAACCTGACAGCGAGTCAGCTAGCAAGCTACAAATGCTGCAAGAGAATATCAACGAGTACGATGGTAGAGACCTGGAGCCCATGGAAAAAAGGGACCTCTCTGTTGGCACACTGTGTCTGGCTTTATACGCCGAAGATGAACTGTTCTACAGAGCCAGAGTCCTGGCCATCAACGATGGCAACTCCCTTACTGTGGTGGTTCTTTATCTGGACTTTGGTAACGAAGGAGTGGTCAAGCTTGGTCATCTAAAGAAGATCAAGAGGGAATTTATGAACCTTCCTTTTCAGGCATTTGAGTGTAGATTATGTGAAGTAGCCCCCGTGCCCTCTGCCCATTGTCCTATGGGCATATGGTCTCCCAGAGCCACTCAGCGGTTTATACAGCTTACAGAAAACAGGAAGCTAGCTGCCAAGGTGTACTCTCTGGTCAGGAACGTGCTTCATCTTGACCTGTATGACACCAGCACTGAGGAGGACGTGCACATCAATCAAGTGCTCATAGACGAAGGTTTTGCCTTATTTCAAGAGGAGTCTCGCGCATCCAAGATTGCTAACCAGAATGCTGGTGATGGCGCACCAGCTGATGACAACACAGCCTGGATTGATCCATGGCTTGAAAATGAGCCTGATCCTCACAATGATGTCGTAACCAAGGTGACTCTTCGAGGACCCGAGAGCCCAATTGAAATGGGCTTCTACAGTGTGACCAACATAGGAAGGATGAAAGCTGCGAGAGTGGAACAAAGCTCTGTAAATAGTGTTACCTTGAACGATCAGCCCCAGGACCCACATCAAAGGTTCTTGGTCGCGGCAAACATTGGTATAAATGCCACTGGATCTGCTATGATTGCGAGGGACACCACCTTGATGCCAAACATTCACGGTCTGATGCCTTTGGTGGCACTTCTTTTCGCTCCATATGCTGAAATGAGAGTTGACCGTGAGATGCGTCAATACACAGGAGCATTAGTTGGCTTGGGGTTCGATCCCATGACAGACGAGGCGCTTCTTCCAGATCACGACATCGAGCTTGTGTTTGACGTGGACATTTCAGAGGATGACATTATAGGGATCAACTCGCTGCGCACGGCCATCAACTTGGCATTCCAAAGCGAGCAGCAGATGGCTGAGTGGGGAACTCCTGCTGTGGAGAGAATTCAGAAAGCTAGCAGATCCAAGATCTTAGAGCTTGTTCTGAAACGACGGGAAATCAAAACTCCTTGCTCATTTCCCAGAACAGGTCTCTGGAACCAGATCGATCCTGCTTACATTCTGCACGCGGGAGGGGAGGGTGAAACAGATGCAGGCCTCCTTTACACTTTGCACAAGGGTGTTGCCATCTCTGGCAAGCCACTGGATGACGAAGATGAGGAAGCAAGGCTGAAAGTGGCCGAGCTCCGAGATAAGATGGAGTGGCTCAGAAGTTTGGAAGGAAGGATGTATGGCGGATACGATGATGATGATAATGATGACGACGACGACGACGATGATGATGATAATGATGATGACGATAGCGTCTTATGA

Transcript

evm.model.contig_88603.2

atgagatcgGTTATCCTGATGTCAGCCACTATTGAAAGTGATCTATTCTCAATGTACTTTGCCGTTCCTGTGCGTGGCAGAGTGGAGGGAGCCCCTGTTGTCAGTGTAGATGGGAAGTCCTTCCCTGTAGTGGAAAGTTATCTTGAAGACCTTAAAGATATTGGAATGCTCCCCGATGTTACTCTTGAAGAACCAGGTATTGACAAAGTGGGATATGAGTTGGCAGCTCGTCTTGTATACCATCTTGATGAACTGGAGAGAACCAGCAACACAAGGCAAGGCTCTCGTGGGACTGTCCTCATGTTTCTACCTGGTTATTTTGAAATTGAACAGATGGATCATGTCTTAGATGAGATCTGTACAGATTTGATAAATCACTTGTACATGAATCTGCAGCTTGTGTTGCTTCATGGACATCTGCTCTCCCTGAAGGAGATTTTAAACCATAACAGACTGGCCTGCAATGTCCTTACCAGGCATGAGAGTATACTTCCACTGCATTCCCGAATCACAACCCAAGAACAAGGAAGTGTCTTCCAAAAACCACCAGAGGGTTTCAGAAAGGTCATCTTGGCTACAAACATTGCAGAAAGTTCAATCACTGTTCCAGACATCAAATATGTCATTGATTTTTGTCTGGAGAAATGCCTAATATGTGATCCAGAGACAAACTTCCAGAGTTTACGGCCACAGTGGGCATCCAAAGCCAATTGTACTCAGCGCAAAGGTCGCGCTGGTCGTGTGTCTACAGGAATATGCTACAGAATGGTAACCAGGGAGTTTTATCAATCATGCCTTCCACAATTTGGTATTCCTGAGATGCAGAGATGTCCACTAGAACAAGTTGTGTTGAAAGTGAAGCTCTTGGATATTGGGCCTCCCAAGGCTGTACTAAGACTAGCTTTACAGCCTCCAGATTCAGATGACATTGAGCGGACGGTTCTGCTATTGAAGCAGGTGGGTGCCCTGACCATTGTTATGAAGAATGGTACTATTAATCCATGTGATGGCGAGCTGACATTTGTAGGCAAAGTGCTGGGAAGTCTGCCAATTGATGTTCACCTTGGAAAGCTGTTGGTGTTTGCATATGTTTATGGTTGCCTGGAAGAATGCCTTGTTATCAGTGCTTCATTGTCTTTGCAGTCTTTCTTTGCAAACCCCTTTAAGAGGAATTTGAAGCTTACAGAGTTTACTGCATTTTTCGTTTTTCACAGTAAGAAGATGGCCTGGTGTGATTATTCACACAGTGACTGCATTGCAGTTCTCAATGCCTTCAAGGAGTGGAGCATGTTGAAGAGGCGAAAAGGATTCACAAATGGAGAATTTAACTGGAGTCAGGAGAACATGATTCAGCTGGGTCGCATAAGAGAGGTTGAGCAGCTTGTGGAAGAATTGACTGAAAGACTCAAGCAGCTTAATTTGCGAACAATAAGACCTTTGCATCAAAAGGCCACCACTCAGGAGTCTCTTCTCATTTTAAAGCTTGTGATCTGTGGTGCATTCTATCCAAACTACTTTACATCAAGTGATATTGATGAAGCTGAAGTCATGAAAGCCATGTCTGGTCATGATCCTTTTACCACTGTGATGGTCAGGAACATGCCTCCCCATGGTGCTCTGTACCGGTCAGCAATTGCAAGAATGTTCAGGCAGTGTGGTAAAGGCAAAGCTCTGTATTTTGAGGAAAGCAGGGCCTACATTGAATTTGAAAAACCACGTTTTGCTGACCAAGGCTTGGAGTCGAATGCAATTGTCCCAGCTGTCTACAAAGCCATTAAAATGAGACAGCTCAGGAAACCTCTCAGTCTTTTCATCTCTGAAGCAAAAAATCAACAGATGGACAGGCTGATGGAACAGAGGAGGATGGCTACACTTCTTACGTCAAGAGGTCCAGGTAGTGTGGAGTTGATGGAAGAACCACGACAGGTTAACCTCCCTCAGAAGGGCTATTTAGAAATTGTGACCTCAGTGGTGTTAAACGCTGGCCACTTCTGGGCTCAGAAACCTGACAGCGAGTCAGCTAGCAAGCTACAAATGCTGCAAGAGAATATCAACGAGTACGATGGTAGAGACCTGGAGcCCATGGAAAAAAGGGACCTCTCTGTTGGCACACTGTGTCTGGCTTTATACGCCGAAGATGAACTGTTCTACAGAGCCAGAGTCCTGGCCATCAACGATGGCAACTCCCTTACTGTGGTGGTTCTTTATCTGGACTTTGGTAACGAAGGAGTGGTCAAGCTTGGTCATCTAAAGAAGATCAAGAGGGAATTTATGAACCTTCCTTTTCAGGCATTTGAGTGTAGATTATGTGAAGTAGCCCCCGTGCCCTCTGCCCATTGTCCTATGGGCATATGGTCTCCCAGAGCCACTCAGCGGTTTATACAGCTTACAGAAAACAGGAAGCTAGCTGCCAAGGTGTACTCTCTGGTCAGGAACGTGCTTCATCTTGACCTGTATGACACCAGCACTGAGGAGGACGTGCACATCAATCAAGTGCTCATAGACGAAGGTTTTGCCTTATTTCAAGAGGAGTCTCGCGCATCCAAGATTGCTAACCAGAATGCTGGTGATGGCGCACCAGCTGATGACAACACAGCCTGGATTGATCCATGGCTTGAAAATGAGCCTGATCCTCACAATGATGTCGTAACCAAGGTGACTCTTCGAGGACCCGAGAGCCCAATTGAAATGGGCTTCTACAGTGTGACCAACATAGGAAGGATGAAAGCTGCGAGAGTGGAACAAAGCTCTGTAAATAGTGTTACCTTGAACGATCAGCCCCAGGACCCACATCAAAGGTTCTTGGTCGCGGCAAACATTGGTATAAATGCCACTGGATCTGCTATGATTGCGAGGGACACCACCTTGATGCCAAACATTCACGGTCTGATGCCTTTGGTGGCACTTCTTTTCGCTCCATATGCTGAAATGAGAGTTGACCGTGAGATGCGTCAATACACAGGAGCATTAGTTGGCTTGGGGTTCGATCCCATGACAGACGAGGCGCTTCTTCCAGATCACGACATCGAGCTTGTGTTTGACGTGGACATTTCAGAGGATGACATTATAGGGATCAACTCGCTGCGCACGGCCATCAACTTGGCATTCCAAAGCGAGCAGCAGATGGCTGAGTGGGGAACTCCTGCTGTGGAGAGAATTCAGAAAGCTAGCAGATCCAAGATCTTAGAGCTTGTTCTGAAACGACGGGAAATCAAAACTCCTTGCTCATTTCCCAGAACAGGTCTCTGGAACCAGATCGATCCTGCTTACATTCTGCACGCGGGAGGGGAGGGTGAAACAGATGCAGGCCTCCTTTACACTTTGCACAAGGGTGTTGCCATCTCTGGCAAGCCACTGGATGACGAAGATGAGGAAGCAAGGCTGAAAGTGGCCGAGCTCCGAGATAAGATGGAGTGGCTCAGAAGTTTGGAAGGAAGGATGTATGGCGGatacgatgatgatgataatgatgacgacgacgacgacgatgatgatgataatgatgatgacgatagcGTCTTATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21010 all species →	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR007502 all species →	Domain	Helicase-associated domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0010529 all species →	Biological Process	obsolete negative regulation of transposition	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_88603.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.