Gene detail

Detailed information of evm.model.contig_89027.1 in Platygyra sinensis

Genomic Location: contig_89027:591...14909
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_89027.1

ATGATTCACTTTACACCGATACAGCTACTGGGGAAGTCCAACTCTTCATATTCCCTTGCAGGTCAGCTTAACATCAATCCAGCATTTCATTCACCTGGTGGAAAGCAGAATGCTACATTTCAAGGAGTAAAGGAACTCCTTGACAAGATGCGCCATGAGTGGAAGGTATTGTCAATAGTAGACGTGGTGCTAAACCACACGGCAAACAATTCTCCTTGGCTATGGGATCACCCAGAATGTGCTTACAACTTGGAGAACTCTCCTCATCTGAAACCTGCATTTTTACTGGATCGTGCTCTCTGGCACTTTTCTTGTCAAGTAGCTGACGGGTCGTGGGCAAGGGATGGCCTGCCAGCACAAGTGAACAGTGAAGACCATATTCACAGACTGGGTGAAATCTTAAGACATCAAATCTTGCCAAAACTGCGACTGTGGGAGTTCTTCTGTGTGGATGTAGACAAGACAGTAGATCAGTTTCGTAATGCCATGTTGAGGGCAAAGAGACCAGTTGGTGGTCCATCTAAACATGATGGGGCACCTCTCAAGGTGACCACTGATACATTGTATGGACGCTTTTCAGGGACCATTGATATGACAAAAGCTCTTGAAAAGTTCAACAAGGAACGCTCTGATGCAATGGATGAAAAGGAGCGACTTCACCTATGCTGTGGTGCATTTAAGGCGCATCTTATTAGCCTCAATGAAGCCATCAAGACAAATGAAGTTGCTGATCATATTGAATCTGCTATTAGAAATATTCAGAATGGTGCACGGTATGAGCGTCTTGATAGAAATGGACCAAGACATCCACAAGTTACTAAAAAATCTCCTTTGACAACAAACTACTTTGTAACGCCTGGTGACTGTGATACTGTGGAAGATGAAGAGAAGCTCATGTTTTCTTACAAGGCAAAATTGTGCATGGCAACTCAGGGATGGATATGGGGAGGAGATCCTCTCAAGGACTTTGCTGCCCCTGGATCATTGGTATATCTGCGGCGCGAAGTCATTGCGTGGGGTGACAGTGTGAAACTGCGGTATGGGCAGAAACCTGAAGATGCGCCTTTTCTTTGGGATCATATGCTACAGTATACCAAGATTTGTGCAGAGTTGTTTGATGGCATTCGCCTTGACAATTGCCACAGCACACCACTGCATGTTGCAGAGTACTTTGTAGATGCAGCAAGAAAATTGAAACCAGAATTGTATGTTACAGCGGAATTGTTCACTGGTTCTGAGGCTACTGACAATATTTTTGTCAACCGTTTGGGCATAACATCTCTTATAAGAGAGGCTTTGAATGCACATGATGCTCACGAGGAAGGTCGTTTGATTTACCGCTATGGAGGTGAACCGGTTGGTGCCTTCATGCACCCTTCAGACGTGAAGCCCCTTGTGCCTAGCATTGCACATGCACTCTTTATGGATGTTACCCATGACAACCCCAGTCCATTTCAGGTGCGATCTGTGTATGACTCTATTGCCAGTGCAGCCTTAGTGTCAATGGCATGCTGTGCGACAGGGAGCTCCAGAGGATATGATGAACTGGTGCCTCATCATATCCATGTGGTCAAAGAAGATCGCCTTTACCTGTCGTGGCCAAACCCAAAGTCTAAGCTTGAGGACAGTGCATTTGTTAAAGAGAGTGATGGTATTCTGTCAGCCAAAAAAGCCATCAATGAGCTGCACAGATGGCTTGGTGAAGAAGGATATACACAGGTGTATGTGGATCAGATTCATCATGATGTTCATGCCATTACAAGACACTGTCCAGACAAACGAAAAACAGTTGTTTTAGTAGCACATTCTGCCTTTCACAAACCCTCAGAGGACCTTCAACCTACCATGCACAGGCAGAAGGTTCATATGATGGGTATACCACCACTTACTATACCAGGTGAGATCAATGAAGTCATTTTTGAAGCCATGTTAGTGAAGAAACCAGGCTTAAATGCTTTTAGTAAGGATGGTGAATTCATAAATGGTCTTCAGTCACATGAGGCACTGGTTCAGCGGCATGTTCCACTTAATGAGGCTAAGTCGATCAGAACTTTATCTAAATCCTCTTCACAGACACTTCGAAAACGCCAAGAAGCGGCCGTCATGAGTTAA

Transcript

evm.model.contig_89027.1

ATGATTCACTTTACACCGATACAGCTACTGGGGAAGTCCAACTCTTCATATTCCCTTGCAGGTCAGCTTAACATCAATCCAGCATTTCATTCACCTGGTGGAAAGCAGAATGCTACATTTCAAGGAGTAAAGGAACTCCTTGACAAGATGCGCCATGAGTGGAAGGTATTGTCAATAGTAGACGTGGTGCTAAACCACACGGCAAACAATTCTCCTTGGCTATGGGATCACCCAGAATGTGCTTACAACTTGGAGAACTCTCCTCATCTGAAACCTGCATTTTTACTGGATCGTGCTCTCTGGCACTTTTCTTGTCAAGTAGCTGACGGGTCGTGGGCAAGGGATGGCCTGCCAGCACAAGTGAACAGTGAAGACCATATTCACAGACTGGGTGAAATCTTAAGACATCAAATCTTGCCAAAACTGCGACTGTGGGAGTTCTTCTGTGTGGATGTAGACAAGACAGTAGATCAGTTTCGTAATGCCATGTTGAGGGCAAAGAGACCAGTTGGTGGTCCATCTAAACATGATGGGGCACCTCTCAAGGTGACCACTGATACATTGTATGGACGCTTTTCAGGGACCATTGATATGACAAAAGCTCTTGAAAAGTTCAACAAGGAACGCTCTGATGCAATGGATGAAAAGGAGCGACTTCACCTATGCTGTGGTGCATTTAAGGCGCATCTTATTAGCCTCAATGAAGCCATCAAGACAAATGAAGTTGCTGATCATATTGAATCTGCTATTAGAAATATTCAGAATGGTGCACGGTATGAGCGTCTTGATAGAAATGGACCAAGACATCCACAAGTTACTAAAAAATCTCCTTTGACAACAAACTACTTTGTAACGCCTGGTGACTGTGATACTGTGGAAGATGAAGAGAAGCTCATGTTTTCTTACAAGGCAAAATTGTGCATGGCAACTCAGGGATGGATATGGGGAGGAGATCCTctcaaggactttgctgcccCTGGATCATTGGTATATCTGCGGCGCGAAGTCATTGCGTGGGGTGACAGTGTGAAACTGCGGTATGGGCAGAAACCTGAAGATGCGCCTTTTCTTTGGGATCATATGCTACAGTATACCAAGATTTGTGCAGAGTTGTTTGATGGCATTCGCCTTGACAATTGCCACAGCACACCACTGCATGTTGCAGAGTACTTTGTAGATGCAGCAAGAAAATTGAAACCAGAATTGTATGTTACAGCGGAATTGTTCACTGGTTCTGAGGCTACTGACAATATTTTTGTCAACCGTTTGGGCATAACATCTCTTATAAGAGAGGCTTTGAATGCACATGATGCTCACGAGGAAGGTCGTTTGATTTACCGCTATGGAGGTGAACCGGTTGGTGCCTTCATGCACCCTTCAGACGTGAAGCCCCTTGTGCCTAGCATTGCACATGCACTCTTTATGGATGTTACCCATGACAACCCCAGTCCATTTCAGGTGCGATCTGTGTATGACTCTATTGCCAGTGCAGCCTTAGTGTCAATGGCATGCTGTGCGACAGGGAGCTCCAGAGGATATGATGAACTGGTGCCTCATCATATCCATGTGGTCAAAGAAGATCGCCTTTACCTGTCGTGGCCAAACCCAAAGTCTAAGCTTGAGGACAGTGCATTTGTTAAAGAGAGTGATGGTATTCTGTCAGCCAAAAAAGCCATCAATGAGCTGCACAGATGGCTTGGTGAAGAAGGATATACACAGGTGTATGTGGATCAGATTCATCATGATGTTCATGCCATTACAAGACACTGTCCAGACAAACGAAAAACAGTTGTTTTAGTAGCACATTCTGCCTTTCACAAACCCTCAGAGGACCTTCAACCTACCATGCACAGGCAGAAGGTTCATATGATGGGTATACCACCACTTACTATACCAGGTGAGATCAATGAAGTCATTTTTGAAGCCATGTTAGTGAAGAAACCAGGCTTAAATGCTTTTAGTAAGGATGGTGAATTCATAAATGGTCTTCAGTCACATGAGGCACTGGTTCAGCGGCATGTTCCACTTAATGAGGCTAAGTCGATCagaactttatctaaatcctcttcacagacacttcgaaaacgccaagaagcggccgtcatgagttaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14702 all species →	hGDE_central	Central domain of human glycogen debranching enzyme	Domain	Interproscan
PF14701 all species →	hDGE_amylase	Glycogen debranching enzyme, glucanotransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032788 all species →	Domain	Glycogen debranching enzyme, central domain	Interproscan
IPR032792 all species →	Domain	Glycogen debranching enzyme, glucanotransferase domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR010401 all species →	Family	Glycogen debranching enzyme	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10569 all species →	GLYCOGEN DEBRANCHING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004134 all species →	Molecular Function	4-alpha-glucanotransferase activity	Interproscan
GO:0004135 all species →	Molecular Function	amylo-alpha-1,6-glucosidase activity	Interproscan
GO:0005980 all species →	Biological Process	glycogen catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_89027.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.