Gene detail

Detailed information of evm.model.contig_89320.1 in Platygyra sinensis

Genomic Location: contig_89320:5643...11804
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04406 all species →	TP6A_N	Type IIB DNA topoisomerase	Domain	Interproscan
PF21180 all species →	TOP6A-Spo11_Toprim	Topoisomerase 6 subunit A/Spo11, Toprim domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034136 all species →	Domain	Topoisomerase 6 subunit A/Spo11, TOPRIM domain	Interproscan
IPR013049 all species →	Domain	Spo11/DNA topoisomerase VI, subunit A, N-terminal	Interproscan
IPR036078 all species →	Homologous_superfamily	Spo11/DNA topoisomerase VI subunit A superfamily	Interproscan
IPR002815 all species →	Family	Spo11/DNA topoisomerase VI subunit A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10848 all species →	MEIOTIC RECOMBINATION PROTEIN SPO11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0006259 all species →	Biological Process	DNA metabolic process	Interproscan
GO:0003918 all species →	Molecular Function	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	Interproscan
GO:0000228 all species →	Cellular Component	nuclear chromosome	Interproscan
GO:0000706 all species →	Biological Process	meiotic DNA double-strand break processing	Interproscan
GO:0007131 all species →	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0042138 all species →	Biological Process	meiotic DNA double-strand break formation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_89320.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.