Detailed information of evm.model.contig_89750.2 in Platygyra sinensis

Genomic Location: contig_89750:9247...15010
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyE3|E3 activity|RBR · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097
all species →		zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR047558
all species →		DomainHeme-oxidized IRP2 ubiquitin ligase 1, BRcat domainInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR044066
all species →		DomainTRIAD supradomainInterproscan
IPR051628
all species →		FamilyLinear Ubiquitination-Associated E3 LigasesInterproscan
IPR018957
all species →		DomainZinc finger, C3HC4 RING-typeInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR047559
all species →		DomainHeme-oxidized IRP2 ubiquitin ligase 1, modified RING finger, HC subclassInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22770
all species →		UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000151
all species →		Cellular Componentubiquitin ligase complexInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0043130
all species →		Molecular Functionubiquitin bindingInterproscan
GO:0043161
all species →		Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0097039
all species →		Biological Processprotein linear polyubiquitinationInterproscan
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.contig_89750.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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