Gene detail

Detailed information of evm.model.contig_90355.2 in Platygyra sinensis

Genomic Location: contig_90355:10880...27455
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_90355.2

ATGAATTTGTTTTCAGATGTTCACCTGTTCGCCGCTGTGCTTGTGGTTTTCTACAAACTTACTTCTTTGTCTGAAGGACAAGCTCTGCTGCAAAATGGAAAGGTCAACTTCACGGTAGCATTTGCAGACTTTCTTTATTGCACAACCGTGCAATACCCTCGTACATTTTCTAGCGCTAGAAATGTACGAGTCCTTGCATCGATCAGCCATAAAAAAGAATCTCTCAGTGTTCATGATTCAGCAGTTGTGTGGACATCAGACGTGTCTCAGAGCAGTTTTCGTGTATGTTTGTTGGAGTCGGGTCTTGTTACAAACGGATCCTCTATCGTGAACTGGATTGCGTTTCGAGGCACACCCTCTGGAATGTTGGATGGCGCCGTCTCCTTCAGTGCATTCACCAGTGGTACAAAATGTACAAGAGTTAACTTTGCACAGACATTTAGAACACCAATTACAGCTTCAGAATGCGAGAAGTTTGACAAAAGCTGGGTATCAGACGCCAGCCGCCGGAAATGGGCGTGGGTTTTGAAAGTCTTTGAGGAATGGAAGAAGCAGAGAAATGAAGCGGTTTTGAAACAAGATTACAGTGGCGAGCCGCGCTTTTCGTCTGTTCCAAAAGTTCTCGCCACAGTACGTCACTCTGTCAGCAACAGGCCACAGGACGCCATGAATATCTGGATAGAAGAGCTGAAGGAAGATTATTTCAGAATCTGCCTCCGGGAAGTGAAAACATTTGACGGCAAGCATCAGAATTTACAAGTGGACTGGCTGGCATTTGTTCGGGGAGGCGTTCAACTTACATTCCAAGGAAAACTTCAATTTGAAAATGGCGGCGCTCCTCTTGAACAAGACAATTTCGCCTTTTGCAAGGTGCATAATTTTACTGAAGAGTTTTATGCAGCTCCAGTTGTCATAGTAACAGCCAATCATCTTTACGATAGCAAGAATGTTTATTCTATCAAGCCAGAGAACAATGTCCTCAACACTTGGATTGAGGAAATAACAACTTCATATTTTCGTGTGTGTGTAAAAGACTTGGCAGGAATGGAAAGTCAGCACGATCCCGTTACCGTTGATTACGCAATTGTTGGAGATCTTGATCCGTGTATTAACGTTTCCTGTAACTACTTCGCTGTTTGTAAGGCATTTGCACCCAGGGATGCGCGGTGTTTATGCGTGGATACCTGTCCATCATACGAAGAGCTCGTATGTTCCTCAAATGGAACCACATACGTCAACAAGTGTATGTTCCAGCGAGAAATGTGCCATCTGAAAGCTAACTTTACTCTGTACCACCCGGGTGACTGTACAGGGTTCCCTTCTCAGAAAGGTCGTCATCGTCTTCGTCACACCCCAAGCTGGGCTGAAGCAGTTTGTGAACAAGTTCCACTGGCTCCTTACGTCTTCTATCCTGATAAACCAGTTCACATACAGGTGTCTGTTAATCACGCCAACTTTTCAGACCACAGTTACGTTCACGAAGCAGTGGTGCCCTGGGTTGAAGACATAAGAGAGAACAATTTCACAGTTTGTGTCACACAAGCCGGAAGAAATGAGAAGAGAAATGGACAGTTCTTTGCCACGGTGGACTGGTTAGCATACCAGGGGGCCCCTGACGGGGGAGTATCGGGAAGCATAGACATGCCAACATGGTGGACTGGAACGAAGTGTCGTATAGTGACATTACCTTCGAGCAAGTTTAAATCAGTGCCCACTGTGCTTGTGTCAGCGGAGCATGAAAGGCGTGGTGTAAAGCACGATGCTTCCTCTGTGTGGGTAGAAGATGTCACAACAACATCCTTCAAGATCTGCATCAGAGAATTACAGAACTTTGATGGAGCTCACCAAAGCATCCATGTTGACTGGATGGCATTTGAAGAGCTTCATCGACCTCTGTTTAGGGAACATGGATCTATCTACTTCGCTAATGGAAGGAAACCATCCAAAGAATTCAACTATGCGTTTTGTGAGGATGTTGTCTTTAGGAAGCATTATAATGATTCTCCAGCAGTGTTAGTGACAGCAAACCACTCAACGAGCGGAGGAAACCTTAATCCAGCGTTCAACTCCATATCAGCTTGGGTAGAGTATATAAACAAGACTGGATTTAGAGCATGTGTAAAGGAGTTGTTTGTGAACCAGCATGACCCTCTGTCTGTGTCATATGCAATCTTACCTGATGTCTGTGAACCAGGCTGGAGTTTCTACAATGGTTCCTGTTACGTCACCAGTGAAACTTGTGAGACATGGTCCAACGCCAGTACAATCTGCAGGAGCATGGGAGCTAATCTACCCGCTATTGAAACTCAAGAAGAGAACGTGTATATTCAGCACAGACACAATGGTGACAAGGGGTGGATTGGTTTGAATGACATTGCAACAGAAGGATTATTCTCCTGGGTGGATGGATGTCCTGATAAATTCCGCTATTGGGCCGACAAACAACCAAACGACTTTAGGGGGGAGGACTGCGTACACACTCTTGGTGCTAGACATGGATACTTGTGGAATGACGTGGATTGCGCTGCATGCCACCAGTACACTTGTAAAAAAGATTATGACGATTGCACCAGCGATCCGTGTTTGAATGGAGGAACCTGTGTCAACGGCAAAAGAAAATTTACCTGCGTCTGTCCTCGTACGCACAAAGGGCGGATATGCGAAGAGTTTGACGAATGCTCCAGTAGTCCCTGTCTGAACGGCGGAACTTGTACTGATGGAGTCAACAACTACACATGTTCCTGTCCTTCGCAGTATTTTGGAAAACACTGCCACGGTATTGCAAAGACTTGCTTTGTTTATTACTGCTGTATTGCTTTATTGTCTTACGACGATGATGACAATGATGATGATGATAATGATGATGATGATAATGATGATGATGATAATGATGATGATGCCCTGGTCCTTCAAACATATTACCTATGCCTTATCAGGTGTTATCATGTTATCATATTTAGAAGAAGATAA

Transcript

evm.model.contig_90355.2

ATGAATTTGTTTTCAGATGTTCACCTGTTCGCCGCTGTGCTTGTGGTTTTCTACAAACTTACTTCTTTGTCTGAAGGACAAGCTCTGCTGCAAAATGGAAAGGTCAACTTCACGGTAGCATTTGCAGACTTTCTTTATTGCACAACCGTGCAATACCCTCGTACATTTTCTAGCGCTAGAAATGTACGAGTCCTTGCATCGATCAGCCATAAAAAAGAATCTCTCAGTGTTCATGATTCAGCAGTTGTGTGGACATCAGACGTGTCTCAGAGCAGTTTTCGTGTATGTTTGTTGGAGTCGGGTCTTGTTACAAACGGATCCTCTATCGTGAACTGGATTGCGTTTCGAGGCACACCCTCTGGAATGTTGGATGGCGCCGTCTCCTTCAGTGCATTCACCAGTGGTACAAAATGTACAAGAGTTAACTTTGCACAGacatttagaacaccaattacagcttcagaatgcgagaagtttgacaaaagctgggtatcagacgccagccgccggaaatgggcgtgggttttgaaagtctttgaggaatggaagaagcagagaaatgaagcggttttgaaacaagattacagtggcgagccgCGCTTTTCGTCTGTTCCAAAAGTTCTCGCCACAGTACGTCACTCTGTCAGCAACAGGCCACAGGACGCCATGAATATCTGGATAGAAGAGCTGAAGGAAGATTATTTCAGAATCTGCCTCCGGGAAGTGAAAACATTTGACGGCAAGCATCAGAATTTACAAGTGGACTGGCTGGCATTTGTTCGGGGAGGCGTTCAACTTACATTCCAAGGAAAACTTCAATTTGAAAATGGCGGCGCTCCTCTTGAACAAGACAATTTCGCCTTTTGCAAGGTGCATAATTTTACTGAAGAGTTTTATGCAGCTCCAGTTGTCATAGTAACAGCCAATCATCTTTACGATAGCAAGAATGTTTATTCTATCAAGCCAGAGAACAATGTCCTCAACACTTGGATTGAGGAAATAACAACTTCATATTTTCGTGTGTGTGTAAAAGACTTGGCAGGAATGGAAAGTCAGCACGATCCCGTTACCGTTGATTACGCAATTGTTGGAGATCTTGATCCGTGTATTAACGTTTCCTGTAACTACTTCGCTGTTTGTAAGGCATTTGCACCCAGGGATGCGCGGTGTTTATGCGTGGATACCTGTCCATCATACGAAGAGCTCGTATGTTCCTCAAATGGAACCACATACGTCAACAAGTGTATGTTCCAGCGAGAAATGTGCCATCTGAAAGCTAACTTTACTCTGTACCACCCGGGTGACTGTACAGggTTCCCTTCTCAGAAAGGTCGTCATCGTCTTCGTCACACCCCAAGCTGGGCTGAAGCAGTTTGTGAACAAGTTCCACTGGCTCCTTACGTCTTCTATCCTGATAAACCAGTTCACATACAGGTGTCTGTTAATCACGCCAACTTTTCAGACCACAGTTACGTTCACGAAGCAGTGGTGCCCTGGGTTGAAGACATAAGAGAGAACAATTTCACAGTTTGTGTCACACAAGCCGGAAGAAATGAGAAGAGAAATGGACAGTTCTTTGCCACGGTGGACTGGTTAGCATACCAGGGGGCCCCTGACGGGGGAGTATCGGGAAGCATAGACATGCCAACATGGTGGACTGGAACGAAGTGTCGTATAGTGACATTACCTTCGAGCAAGTTTAAATCAGTGCCCACTGTGCTTGTGTCAGCGGAGCATGAAAGGCGTGGTGTAAAGCACGATGCTTCCTCTGTGTGGGTAGAAGATGTCACAACAACATCCTTCAAGATCTGCATCAGAGAATTACAGAACTTTGATGGAGCTCACCAAAGCATCCATGTTGACTGGATGGCATTTGAAGAGCTTCATCGACCTCTGTTTAGGGAACATGGATCTATCTACTTCGCTAATGGAAGGAAACCATCCAAAGAATTCAACTATGCGTTTTGTGAGGATGTTGTCTTTAGGAAGCATTATAATGATTCTCCAGCAGTGTTAGTGACAGCAAACCACTCAACGAGCGGAGGAAACCTTAATCCAGCGTTCAACTCCATATCAGCTTGGGTAGAGTATATAAACAAGACTGGATTTAGAGCATGTGTAAAGGAGTTGTTTGTGAACCAGCATGACCCTCTGTCTGTGTCATATGCAATCTTACCTGATGTCTGTGAACCAGGCTGGAGTTTCTACAATGGTTCCTGTTACGTCACCAGTGAAACTTGTGAGACATGGTCCAACGCCAGTACAATCTGCAGGAGCATGGGAGCTAATCTACCCGCTATTGAAACTCAAGAAGAGAACGTGTATATTCAGCACAGACACAATGGTGACAAGGGGTGGATTGGTTTGAATGACATTGCAACAGAAGGATTATTCTCCTGGGTGGATGGATGTCCTGATAAATTCCGCTATTGGGCCGACAAACAACCAAACGACTTTAGGGGGGAGGACTGCGTACACACTCTTGGTGCTAGACATGGATACTTGTGGAATGACGTGGATTGCGCTGCATGCCACCAGTACACTTGTAAAAAAGATTATGACGATTGCACCAGCGATCCGTGTTTGAATGGAGGAACCTGTGTCAACGGCAAAAGAAAATTTACCTGCGTCTGTCCTCGTACGCACAAAGGGCGGATATGCGAAGAGTTTGACGAATGCTCCAGTAGTCCCTGTCTGAACGGCGGAACTTGTACTGATGGAGTCAACAACTACACATGTTCCTGTCCTTCGCAGTATTTTGGAAAACACTGCCACGGTATTGCAAAGACTTGCTTTGTTTATTACTGCTGTATTGCTTTATTGTCTTACgacgatgatgacaatgatgatgatgataatgatgatgatgataatgatgatgatgataatgatgatgatgcccTGGTCCTTCAAACATATTACCTATGCCTTATCAGGTGTTATCATGTTATCATATTTAGAAGAAGATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR051004 all species →	Family	Dendritic cell-specific ICAM-grabbing non-integrin domain-containing protein	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22802 all species →	C-TYPE LECTIN SUPERFAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0044419 all species →	Biological Process	biological process involved in interspecies interaction between organisms	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_90355.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.