Gene detail

Detailed information of evm.model.contig_91189.2 in Platygyra sinensis

Genomic Location: contig_91189:13919...21190
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_91189.2

ATGCAGCGGGTAGTCCCGAGCGGGCAAGATGGCTCCATCTTGCCCGCTCGGGTAGCCAATCACAGCGCGCGACTTGGTTCATCTTGCCCGCTCACGGAGCTACGTAGCCATATAATAAAGTGTGTTATCGATGGCAAAAGATATGACGAGGAAAAGTTCCCTGGATCATTTCCATACCGTGCCAAGGCCATGTTTGCCTTTGAAGAAATTGACGGAGTGGACGTCTGTTTCTTTGGCATGCATGTCCAGGAATATGGCTCTGAATGTGCCCTGCCCAACACACGCCGTGTCTACATCTCTTATTTGGACAGTGTTCACTTCTTTCAACCTCGTCATCTACGTACATCTGTTTACCATGAAATCCTTATTGGTTACTTGGAACATGTTGGCCATCTAGGGTATCAAATTGCTCATATATGGGCGTGCCCTCCTAGTGAAGGAGATGACTACATTTTTCATTGTCACCCTGTGGAACAGAAGATTCCCAAACACAAGCGACTGGTCGATTGGTACAAGAAGATGCTTGATAAGGCTGTCAGAGATCGTGTTGTCATTGAATACAAGGATATCCTCAAGCAAGCCAACGATGATGGTTTGACAACGGCTAAGGAGTTACCCTACTTTGATGGTGATTTTTGGCCAAATGCATTGGAGGACAGCATCAAAGAGCTTGACCAGGAAGAGGAGGAGAGGAAAACTGCTTTAGCAGCAGCGGCTGCCGAGACTGCCAGCAAAGAGGGCAAACCAGGCAGTAAGAACAAAGGCAACAACAAGCGAAGTAACAACAAAAAAGGCACAAAGAGTAAAGCGAACAACAGAAAGAACCCCAAGAAGACGAACGGTCCTGTGACGGGTCTGTGCGACTTATCACAAAGATTGTACAACACTATGGAGAAACACAGAGAGGTATTCTTCGTTATTCGATTGAACGGCCGTAAGACGCCTGAAACGAGTGACCCAGATTCCCTCATGAACTGCGACATAATGGACGGCCGGGATGCTTTCTTGACCCTCGCACGCGAGAAGCACTACGAATTTTCATCCCTTCGACGAGCCAAGTTTTCCACCATGGCCATGTTGGTCGAGCTTCACAATAACGGCGCGGATCGATTTGTCTACAGCTGCAACATTTGTAAGAGACACGTGGAAACGCGATACCACTGCAATGAATGCGAGGACTACGATCTCTGTGTACCTTGCTACAACGAGAAAGGTCATGAACATAGCATGGAGAAATTAGGTCTTGGTTTGGATGATCTAGATCAACAGCAGGGACAAGAAGGAGAAAAGGAACGGCCTCAGCTCAGTGCACAGGAGGAACGACGGTTAAAGATCCAGCGGTGCATACAGAGCTTGGTACATGCCACCCACTGTCGGGAGATCAACTGCCAGCACTTAAGCTGTGCCAAGATGAAGCGTGTTGTGGAGCACACAAAAACGTGCAAACGAAAAACTGGTGGAGGATGTCGTATTTGTCAGGAATTAATTCATCTTTGTTGTTATCATGCCAAGCATTGTCTAGAAAGGGAATGCGTTGTGCCATTCTGTCGGCATATTAAACTCAAGCTCAGACAACAACAAACGCAGCAAAGATTTGCTCAGTCTCAAACCCTTCGTCGTCGTATGGCTACAATGCAGCGTCAAGGAATGCAGGCTCCACCTCAGATGCCAAACCAGGCCATGCAACCAAGCATGGGTGGTCCTGGGGCAATTGGGCAGGCTCATCCGGCTTTACAACCTCCTCAGCAGCAGCCCCCTCCTTACCAGCCTCCTGTTATGCCTCAGAAACCTGTCATTAGCGGCCCCCCTCCACGTGCAGTAGAGGCGGCACAGAAAATTGCACAGGCTGCTACTATGCAAGCTGTAGGTGGCGGTGTACCCATGGGTTTGCCAGCTCGGAATATGCCACATCCTCAACAAGTTTTCCAACCGCAGCAGCCGCCAAACATGACAGCTCCCCCTGGTTCCATGGCACCCTCTGGTATGATGAGACATCAGAATCCTGCTCTTCTACAGCAAAGCATGGGACAGAACATGCCACAGGGAATGCCTCCACAGAGCATCCCTCAACCTATGCAGCAACCTATGCAGCAAACCATGCCACAGCAAATGCAACCTTCGTCTGGAGCACCAGTCCAGCCGAACAATCCTGCTGCACTAGAGTGGTATTCTAAACAGCAACAACAGCAACAGATGAACCACCCTAATGCTATGATGAATGCAGGACAGCAGCAATTCCCTCAATTGCCGGGTGGACAGCAACAAGGTTTAACTGTCGGACCTCAGCAGAATCGTCCCAATATGGCTGTACCGGCTTTGCAGCAGTTGTTGTATACGCTTAAGGCTCCAAGCACCCCTCAACAACAGGCCAAAGTTTTGAGTATACTTAAACAACATCCACAACTGATGTCAGCATTCATCAAACAGAGACAACAAGCACAACAACAACAGCACCAGCAGCAGCAGCAACAACAACAACAGCAAGGCATGCCTCCAGGAATGCAACAAGCGATGCAGCAAGGAATGCCACAAACTATGCAACCCAACTTGCAACAGAACATGCCGCACAACATGCAGGCTGCTGGCATGCAGCAACAGGCAATGCAACAGAATATGGCACAGGGAATGCCGGGTATGCAGCAGGGAATGCAAAATCCCATGCAACAAGGAATGCATCAAGGTATGCCTAATGCTGTGCCGCAGAATATGCAGCATGCGATGCAGAATCCGATACAACAAATGCCAATTGCTTCACAGGCCAGCGTTAGTCAGCAGCAACAACAGTGGTATAGACTTATTCAACAGCAGCAACAACAACAGCAACAGCAGCAGCAACAACAACAATCACAGCAGCAACAACAGCAAAACATGTTCCAACAACCTCCTCCCTTTTCACAAATGAATGCAATGAGGAGAGGTCAAATTCAGAGTCAAATGACCAATTCACAAGCGGCAATGATGCATCCACATAATGGCCAACCGCAGGCGTCGATAGCGCAACACTTCCAGGCGAAACAAGCGCAATATGCGTCACATCTGATGTCCCCACAATCCGCCAACCCTATGTCACCGCAACAAGTTATACACCCATCGCAGTCACCTCGACCAGTCATGTCTCCTCAGCCTCACCCGGCAGGAGCATCGCCTCGCCAGCAGCCTACCATGTCCCCACGTCCACAACAAACTTCGTTAACGTCTCCTCGGCCCACGCCTTCTCCGCACCAAGCCTCCACGCCTCAAATGGACAATCAGCTTATGGACAAACCATTGTTTAGTGCGCGAATGACGCTTCCACCGATCCAGACTCCCACGGACCCGGACCTGTCAATTGGTCAGGAAGATTCACCGCTGACGCCACAAGATCAGTTGACCCAATTTGTCGAAAATTTATAA

Transcript

evm.model.contig_91189.2

atgcagcgggtagtcccgagcgggcaagatggctccatcttgcccgctcgggtagccaatcacagcgcgcgacttggttcatcttgcccgctcacggagctacgtagccatataataaagtgtGTTATCGATGGCAAAAGATATGACGAGGAAAAGTTCCCTGGATCATTTCCATACCGTGCCAAGGCCATGTTTGCCTTTGAAGAAATTGACGGAGTGGACGTCTGTTTCTTTGGCATGCATGTCCAGGAATATGGCTCTGAATGTGCCCTGCCCAACACACGCCGTGTCTACATCTCTTATTTGGACAGTGTTCACTTCTTTCAACCTCGTCATCTACGTACATCTGTTTACCATGAAATCCTTATTGGTTACTTGGAACATGTTGGCCATCTAGGGTATCAAATTGCTCATATATGGGCGTGCCCTCCTAGTGAAGGAGATGACTACATTTTTCATTGTCACCCTGTGGAACAGAAGATTCCCAAACACAAGCGACTGGTCGATTGGTACAAGAAGATGCTTGATAAGGCTGTCAGAGATCGTGTTGTCATTGAATACAAGGATATCCTCAAGCAAGCCAACGATGATGGTTTGACAACGGCTAAGGAGTTACCCTACTTTGATGGTGATTTTTGGCCAAATGCATTGGAGGACAGCATCAAAGAGCTTGACCAGGAAGAGGAGGAGAGGAAAACTGCTTTAGCAGCAGCGGCTGCCGAGACTGCCAGCAAAGAGGGCAAACCAGGCAGTAAGAACAAAGGCAACAACAAGCGAAGTAACAACAAAAAAGGCACAAAGAGTAAAGCGAACAACAGAAAGAACCCCAAGAAGACGAACGGTCCTGTGACGGGTCTGTGCGACTTATCACAAAGATTGTACAACACTATGGAGAAACACAGAGAGGTATTCTTCGTTATTCGATTGAACGGCCGTAAGACGCCTGAAACGAGTGACCCAGATTCCCTCATGAACTGCGACATAATGGACGGCCGGGATGCTTTCTTGACCCTCGCACGCGAGAAGCACTACGAATTTTCATCCCTTCGACGAGCCAAGTTTTCCACCATGGCCATGTTGGTCGAGCTTCACAATAACGGCGCGGATCGATTTGTCTACAGCTGCAACATTTGTAAGAGACACGTGGAAACGCGATACCACTGCAATGAATGCGAGGACTACGATCTCTGTGTACCTTGCTACAACGAGAAAGGTCATGAACATAGCATGGAGAAATTAGGTCTTGGTTTGGATGATCTAGATCAACAGCAGGGACAAGAAGGAGAAAAGGAACGGCCTCAGCTCAGTGCACAGGAGGAACGACGGTTAAAGATCCAGCGGTGCATACAGAGCTTGGTACATGCCACCCACTGTCGGGAGATCAACTGCCAGCACTTAAGCTGTGCCAAGATGAAGCGTGTTGTGGAGCACACAAAAACGTGCAAACGAAAAACTGGTGGAGGATGTCGTATTTGTCAGGAATTAATTCATCTTTGTTGTTATCATGCCAAGCATTGTCTAGAAAGGGAATGCGTTGTGCCATTCTGTCGGCATATTAAACTCAAGCTCAGACAACAACAAACGCAGCAAAGATTTGCTCAGTCTCAAACCCTTCGTCGTCGTATGGCTACAATGCAGCGTCAAGGAATGCAGGCTCCACCTCAGATGCCAAACCAGGCCATGCAACCAAGCATGGGTGGTCCTGGGGCAATTGGGCAGGCTCATCCGGCTTTACAACCTCCTCAGCAGCAGCCCCCTCCTTACCAGCCTCCTGTTATGCCTCAGAAACCTGTCATTAGCGGCCCCCCTCCACGTGCAGTAGAGGCGGCACAGAAAATTGCACAGGCTGCTACTATGCAAGCTGTAGGTGGCGGTGTACCCATGGGTTTGCCAGCTCGGAATATGCCACATCCTCAACAAGTTTTCCAACCGCAGCAGCCGCCAAACATGACAGCTCCCCCTGGTTCCATGGCACCCTCTGGTATGATGAGACATCAGAATCCTGCTCTTCTACAGCAAAGCATGGGACAGAACATGCCACAGGGAATGCCTCCACAGAGCATCCCTCAACCTATGCAGCAACCTATGCAGCAAACCATGCCACAGCAAATGCAACCTTCGTCTGGAGCACCAGTCCAGCCGAACAATCCTGCTGCACTAGAGTGGTATTctaaacagcaacaacagcaacagatGAACCACCCTAATGCTATGATGAATGCAGGACAGCAGCAATTCCCTCAATTGCCGGGTGGACAGCAACAAGGTTTAACTGTCGGACCTCAGCAGAATCGTCCCAATATGGCTGTACCGGCTTTGCAGCAGTTGTTGTATACGCTTAAGGCTCCAAGCACCCCTCAACAACAGGCCAAAGTTTTGAGTATACTTAAACAACATCCACAACTGATGTCAGCATTCATCAAACAGAGACAACaagcacaacaacaacagcaccagcagcagcagcaacaacaacaacagcaaggcATGCCTCCAGGAATGCAACAAGCGATGCAGCAAGGAATGCCACAAACTATGCAACCCAACTTGCAACAGAACATGCCGCACAACATGCAGGCTGCTGGCATGCAGCAACAGGCAATGCAACAGAATATGGCACAGGGAATGCCGGGTATGCAGCAGGGAATGCAAAATCCCATGCAACAAGGAATGCATCAAGGTATGCCTAATGCTGTGCCGCAGAATATGCAGCATGCGATGCAGAATCCGATACAACAAATGCCAATTGCTTCACAGGCCAGCGTTAGTCAGCAGCAACAACAGTGGTATAGACTTAttcaacagcagcaacaacaacagcaacagcagcagcaacaacaacaatcacagcagcaacaacagcaaaacatgTTCCAACAACCTCCTCCCTTTTCACAAATGAATGCAATGAGGAGAGGTCAAATTCAGAGTCAAATGACCAATTCACAAGCGGCAATGATGCATCCACATAATGGCCAACCGCAGGCGTCGATAGCGCAACACTTCCAGGCGAAACAAGCGCAATATGCGTCACATCTGATGTCCCCACAATCCGCCAACCCTATGTCACCGCAACAAGTTATACACCCATCGCAGTCACCTCGACCAGTCATGTCTCCTCAGCCTCACCCGGCAGGAGCATCGCCTCGCCAGCAGCCTACCATGTCCCCACGTCCACAACAAACTTCGTTAACGTCTCCTCGGCCCACGCCTTCTCCGCACCAAGCCTCCACGCCTCAAATGGACAATCAGCTTATGGACAAACCATTGTTTAGTGCGCGAATGACGCTTCCACCGATCCAGACTCCCACGGACCCGGACCTGTCAATTGGTCAGGAAGATTCACCGCTGACGCCACAAGATCAGTTGACCCAATTTGTCGaaaatttataa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08214 all species →	HAT_KAT11	Histone acetylation protein	Domain	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF02135 all species →	zf-TAZ	TAZ zinc finger	Family	Interproscan
PF09030 all species →	Creb_binding	Creb binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013178 all species →	Family	Histone acetyltransferase Rtt109/CBP	Interproscan
IPR000197 all species →	Domain	Zinc finger, TAZ-type	Interproscan
IPR031162 all species →	Domain	CBP/p300-type histone acetyltransferase domain	Interproscan
IPR009110 all species →	Homologous_superfamily	Nuclear receptor coactivator, interlocking	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR035898 all species →	Homologous_superfamily	TAZ domain superfamily	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR014744 all species →	Domain	Nuclear receptor coactivator, CREB-bp-like, interlocking	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13808 all species →	CBP/P300-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000123 all species →	Cellular Component	histone acetyltransferase complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16798	GLI2; zinc finger protein GLI2	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.