Detailed information of evm.model.contig_92051.1 in Platygyra sinensis

Genomic Location: contig_92051:11501...27787
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002183 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00168
all species →
C2C2 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027080
all species →
FamilyProtein Unc-13Interproscan
IPR000008
all species →
DomainC2 domainInterproscan
IPR035892
all species →
Homologous_superfamilyC2 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10480
all species →
PROTEIN UNC-13 HOMOLOGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005516
all species →
Molecular Functioncalmodulin bindingInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0007268
all species →
Biological Processchemical synaptic transmissionInterproscan
GO:0007528
all species →
Biological Processneuromuscular junction developmentInterproscan
GO:0016081
all species →
Biological Processsynaptic vesicle dockingInterproscan
GO:0016082
all species →
Biological Processsynaptic vesicle primingInterproscan
GO:0016188
all species →
Biological Processsynaptic vesicle maturationInterproscan
GO:0017075
all species →
Molecular Functionsyntaxin-1 bindingInterproscan
GO:0019992
all species →
Molecular Functiondiacylglycerol bindingInterproscan
GO:0030672
all species →
Cellular Componentsynaptic vesicle membraneInterproscan
GO:0031594
all species →
Cellular Componentneuromuscular junctionInterproscan
GO:0035249
all species →
Biological Processsynaptic transmission, glutamatergicInterproscan
GO:0042734
all species →
Cellular Componentpresynaptic membraneInterproscan
GO:0043195
all species →
Cellular Componentterminal boutonInterproscan
GO:0061789
all species →
Biological Processdense core granule primingInterproscan
GO:0098831
all species →
Cellular Componentpresynaptic active zone cytoplasmic componentInterproscan
GO:0099525
all species →
Biological Processpresynaptic dense core vesicle exocytosisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.contig_92051.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Platygyra sinensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Platygyra sinensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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