Gene detail

Detailed information of evm.model.contig_92083.1 in Platygyra sinensis

Genomic Location: contig_92083:1104...19967
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_92083.1

ATGGTAAATCTCTGCACCGTAGCTCTACAGCTTTGCGAATCTTTCCTGCTGTCGAAAGGAAAAGAAAAGTACAAACAGATAGAAGCACGATACTGCACCGCGAAAGGCTGTCGCTTGAGGTTCGATAATGAACGGACACTGGGTGGTGGACACATTGGGATGGAAAACGAGGAGAAATTGACCGATCTGCGTACGTTGCTCTTCCCATCAGGAGAACTAAAAGGTCAGTTCAAGCTGATGACGGAAATGTTTCACATCACTCACAGCACTCTGCACATTGGACTCACCACAACCCTTCAACATTATAACACTATCTACAGGTATTACGCGAGAATGACTGAAATGAAACAAGGTACTCCTGAAGAAGCTGAAGTTAGAAAGCAACTTTTGCTGTTTGTCCTTCAGTGGAATACCTGTCTGCAGGATTCGCACTTTATGAGGCTGTGTTCGGAGTTTTACATCACAAATGCTGCTTGGCTTCTTCATCTGTTAAACAGCTGTGCTTCTGAAAATCAAGGCTTATCTGAGAATGAAATCCGTGCTAAACAGCGGGAAATATTTGCAAGTATTCCCGAGTTTTACGTCAAAGACATGTGTTCTTGGTTCAGTTTTGCCGCTGTACATAAGCCTTGTGCACTCAAGGGATTGGATATCTGTGTTTTCGTTGATTGTTGTTGTGCTCTAATCGAGCGCCGGGACCTGGTGCCTGGACCTGTGACGGCCACAAGAATCATATCAGCTCTGTTGTCATTCGCTGAAATATGTGTCAGAAATAAAAGGAAAAACAAACTTTTGGAGACTACAACATGGGGAAGCGGCATTGAAGGTGACCTGATGGCCTGCGTAGCTATGTGTCCAGCGGTAAGAGAAAAGCTCGGCCCAGCTCTCATTCATACGTACTCGTCGGTCGACATTGTGGAGGGCCTGGATGTGGACAAAGAAGAATTTGACAAGTATTCAGCCAGATTCGAGATTGTCAAGTTGCTAGAAAACCTGTGGAAGAAACCGGACTGCCTGCCTGCGATTTTGGGAGAATGTGGAAGGGAGAGCTTTCAGTCTTTCCTAGGTTCCATACTGGACACGCTTCTTTACGTCCTTAAAGATGGTTTGCTACGACTTACGAACGTGAAGAAATTACAGAGTGCCAAGCAGTCGGACGAAAAGTGGAAAGAACTGAGCATAGAACAGCGCCAAGAAAAGGAACAGTTTTTGATGGGTGAAGGGCAGGCTGCTAAATCCCTTATGCACATGGCTAACGCGACACTGGCTTTTCTGGAGAAAATCACAGAAGAAGACAAAGTGGCTCGCTGTTTCTCACGCTCTCCCCTGTCACTTAGGGCGGCAGCAGCGATCATCGGATTTTTGGATTCATTGTGCGGCCGTAAATCAGTGGATTTGAAAGTTCAAAACATGGAGAAGTATTCTTTTGATCCGCGTGACCTGCTAGTTAAAATTCTAACAGTGTTAGTGCGCATGTCAAATGCCAGCGAAGAGAGAGAGTTTGTGAAATGCCTCGCCGCTAACCCAGACTACAGCAGGCTCAGCGTGGAGCGAGCCTTGCGTGTTGTTCAGCGGGAGAACCTCGCTCCTGATCACGTGGTTCAAGACTTGAGAAGAGTTATGCAAGAGGTTAGCTTAATACTAGCACGAGACGAAGACAACCCCTCCCCGGGTGAAGACGAATCAGACAAAGACGAGACTGAGCTTCCCGAACTGGAATGTGTGCCTGAGGAGGGTGGTGAGGGGGCTTGTAAAGCGGAACCACGTGATGCAAAGCAGGCAGATCAAGCTTATATTGAAGCCCTTGAGCTGCTCAAGTTTGACACTGCGGAGCTTGTGGAATATCATGCTTTTCGCTGCCGCGCCTGTCAGCCCATGTGTCCCAGGTCTGGTAAAGTCAAGGCTCTTATGCGAGAAGCAGCGCAACTTAAAAGTAACCTTCCGATTCATCCAAATGCTTCAATCCTCGTTCGTCAGGATGAAAACCGCATGGACTTTGTCCGTGCGCTTATTACCGGCACGGTAGATACGCCGTACAGTCGGGGCTGCTTCTGTTTCGATGTTTACTTTCCGTCCTCGTATCCTGTTGATCCACCGATGGTGAAAATTATTACCACCGGTAATGGCACTGTGAGGTTCAACCCGAATCTTTATGCAGACGGAAAGGTTTGCTTGAGTTTGCTGGGGACCTTCCACGGCAGAGAAGCCAGCGAAAAATGGGATCCGAAGAAGTCTTCGCTTTACCAGGGTCCGGAAAATCACCTGCATTCCATCACGGGTGTATTGATCCCATTGTGGAACACTTGGAAGTTGGAAGCTAAACTTGGGAAGAGCATCGCCCTGGACGAGACCTCAGCGAACAGTTTATTCAACCACTTCGTGTCTGGTGACTCACTTCCAATATTGGGTATTGACGATGCACATTCGTTTTTGACCAAAATCTCCGGTGCATCTAAGTCAAACCAATGCTTCGATGGCGATTGTTGGTACATCCTAAAAGGGAAGCAAGGGCAAACGCAGTGGTGGTTCCTCTGCAAGGGCCTCACTTACCACGAGAACCAGAAGAACCAGAAGAACCAGAAGAACCCGAGAACCACGAGAACCACAAGAACCACAAGAACCACGAGAACCAAAGAACCACAAAAACCACAAGAACCACAAGAAGCACAAGAACCACAAGAACCACAAGAACCAGAGAGCCACAAGAACCAGAGAACCACAAGAACCAGAGAACCACAAGAACCACAAGAACCAGAGAGCCACAAGAACCACGAGAACCAGAGAACCACAAGAACCACAAGAACCACAAGAACAACAAGAACAACAAGAACCAGAGAGCCACAAGAACCAGAGAACCACAAGAACCACAAGAACCACCAGATCCAGAAGAACCACCAGATCCAGAAGAACCATGAGAACCACAAGACTCAGAAGAACCACAAGAACCAGAGAACCACAAGAACCAAGAGAAACACAAGAACCACAACAACCACGAGGACCAAAGGAACCACGACAACCAGAGAACCACAAGAACCACAAGAACCACAAGAACCAGAGAGCCACAAGAACCACAAGAACCACAAGAACCACAAGAACCACAAGAACCACGAGAACCACAAGAACCACAAGAACCAGAGAACCACAAGAACCACAAGAACTAGAAGAACCAGAGAACCACAAGAACCATGA

Transcript

evm.model.contig_92083.1

ATGGTAAATCTCTGCACCGTAGCTCTACAGCTTTGCGAATCTTTCCTGCTGtcgaaaggaaaagaaaagtacAAACAGATAGAAGCACGATACTGCACCGCGAAAGGCTGTCGCTTGAGGTTCGATAATGAACGGACACTGGGTGGTGGACACATTGGGATGGAAAACGAGGAGAAATTGACCGATCTGCGTACGTTGCTCTTCCCATCAGGAGAACTAAAAGGTCAGTTCAAGCTGATGACGGAAATGTTTCACATCACTCACAGCACTCTGCACATTGGACTCACCACAACCCTTCAACATTATAACACTATCTACAGGTATTACGCGAGAATGACTGAAATGAAACAAGGTACTCCTGAAGAAGCTGAAGTTAGAAAGCAACTTTTGCTGTTTGTCCTTCAGTGGAATACCTGTCTGCAGGATTCGCACTTTATGAGGCTGTGTTCGGAGTTTTACATCACAAATGCTGCTTGGCTTCTTCATCTGTTAAACAGCTGTGCTTCTGAAAATCAAGGCTTATCTGAGAATGAAATCCGTGCTAAACAGCGGGAAATATTTGCAAGTAttcccgagttttacgtcaAAGACATGTGTTCTTGGTTCAGTTTTGCCGCTGTACATAAGCCTTGTGCACTCAAGGGATTGGATATCTGTGTTTTCGTTGATTGTTGTTGTGCTCTAATCGAGCGCCGGGACCTGGTGCCTGGACCTGTGACGGCCACAAGAATCATATCAGCTCTGTTGTCATTCGCTGAAATATGTGTCAGAAATAAAAGGAAAAACAAACTTTTGGAGACTACAACATGGGGAAGCGGCATTGAAGGTGACCTGATGGCCTGCGTAGCTATGTGTCCAGCGGTAAGAGAAAAGCTCGGCCCAGCTCTCATTCATACGTACTCGTCGGTCGACATTGTGGAGGGCCTGGATGTGGACAAAGAAGAATTTGACAAGTATTCAGCCAGATTCGAGATTGTCAAGTTGCTAGAAAACCTGTGGAAGAAACCGGACTGCCTGCCTGCGATTTTGGGAGAATGTGGAAGGGAGAGCTTTCAGTCTTTCCTAGGTTCCATACTGGACACGCTTCTTTACGTCCTTAAAGATGGTTTGCTACGACTTACGAACGTGAAGAAATTACAGAGTGCCAAGCAGTCGGACGAAAAGTGGAAAGAACTGAGCATAGAACAGCGCCAAGAAAAGGAACAGTTTTTGATGGGTGAAGGGCAGGCTGCTAAATCCCTTATGCACATGGCTAACGCGACACTGGCTTTTCTGGAGAAAATCACAGAAGAAGACAAAGTGGCTCGCTGTTTCTCACGCTCTCCCCTGTCACTTAGGGCGGCAGCAGCGATCATCGGATTTTTGGATTCATTGTGCGGCCGTAAATCAGTGGATTtgaaagttcaaaacatggaGAAGTATTCTTTTGATCCGCGTGACCTGCTAGTTAAAATTCTAACAGTGTTAGTGCGCATGTCAAATGCCAGCGAAGAGAGAGAGTTTGTGAAATGCCTCGCCGCTAACCCAGACTACAGCAGGCTCAGCGTGGAGCGAGCCTTGCGTGTTGTTCAGCGGGAGAACCTCGCTCCTGATCACGTGGTTCAAGACTTGAGAAGAGTTATGCAAGAGGTTAGCTTAATACTAGCACGAGACGAAGACAACCCCTCCCCGGGTGAAGACGAATCAGACAAAGACGAGACTGAGCTTCCCGAACTGGAATGTGTGCCTGAGGAGGGTGGTGAGGGGGCTTGTAAAGCGGAACCACGTGATGCAAAGCAGGCAGATCAAGCTTATATTGAAGCCCTTGAGCTGCTCAAGTTTGACACTGCGGAGCTTGTGGAATATCATGCTTTTCGCTGCCGCGCCTGTCAGCCCATGTGTCCCAGGTCTGGTAAAGTCAAGGCTCTTATGCGAGAAGCAGCGCAACTTAAAAGTAACCTTCCGATTCATCCAAATGCTTCAATCCTCGTTCGTCAGGATGAAAACCGCATGGACTTTGTCCGTGCGCTTATTACCGGCACGGTAGATACGCCGTACAGTCGGGGCTGCTTCTGTTTCGATGTTTACTTTCCGTCCTCGTATCCTGTTGATCCACCGATGGTGAAAATTATTACCACCGGTAATGGCACTGTGAGGTTCAACCCGAATCTTTATGCAGACGGAAAGGTTTGCTTGAGTTTGCTGGGGACCTTCCACGGCAGAGAAGCCAGCGAAAAATGGGATCCGAAGAAGTCTTCGCTTTACCAGGGTCCGGAAAATCACCTGCATTCCATCACGGGTGTATTGATCCCATTGTGGAACACTTGGAAGTTGGAAGCTAAACTTGGGAAGAGCATCGCCCTGGACGAGACCTCAGCGAACAGTTTATTCAACCACTTCGTGTCTGGTGACTCACTTCCAATATTGGGTATTGACGATGCACATTCGTTTTTGACCAAAATCTCCGGTGCATCTAAGTCAAACCAATGCTTCGATGGCGATTGTTGGTACATCCTAAAAGGGAAGCAAGGGCAAACGCAGTGGTGGTTCCTCTGCAAGGGCCTCACttaccacgagaaccagaagaaccagaagaaccagaagaacccgagaaccacgagaaccacaagaaccacaagaaccacgagaaccaaagaaccacaaaaaccacaagaaccacaagaagcacaagaaccacaagaaccacaagaaccagagagccacaagaaccagagaaccacaagaaccagagaaccacaagaaccacaagaaccagagagccacaagaaccacgagaaccagagaaccacaagaaccacaagaaccacaagaacaacaagaacaacaagaaccagagagccacaagaaccagagaaccacaagaaccacaagaaccaccaGATCCAGAAGAACCACCAGATCCagaagaaccatgagaaccacaagactcagaagaaccacaagaaccagagaaccacaagaaccaagagAAACACAAGAACCACAACAACCACGAGGACCAAAGGAACCACGacaaccagagaaccacaagaaccacaagaaccacaagaaccagagagccacaagaaccacaagaaccacaagaaccacaagaaccacaagaaccacgagaaccacaagaaccacaagaaccagagaaccacaagaaccacaagaactagaagaaccagagaaccacaagaaccatga

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E2\|UBC\|UBC · all ubiquitin genes in this species
Ubiquitin family	UBD\|UBC-like\|UBC · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10408 all species →	Ufd2P_core	Ubiquitin elongating factor core	Family	Interproscan
PF00179 all species →	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR045132 all species →	Family	Ubiquitin conjugation factor E4	Interproscan
IPR000608 all species →	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR019474 all species →	Domain	Ubiquitin conjugation factor E4, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13931 all species →	UBIQUITINATION FACTOR E4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0034450 all species →	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan
GO:0036503 all species →	Biological Process	ERAD pathway	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_92083.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.