Gene detail

Detailed information of evm.model.ptg000002l.584 in Aurelia coerulea

Genomic Location: chr9:9344469...9415536
NR annotation: XP_005094759.1, E3 ubiquitin-protein ligase RNF4 isoform X2 [Aplysia californica]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q9QZS2	E3 ubiquitin-protein ligase RNF4 OS=Mus musculus OX=10090 GN=Rnf4 PE=1 SV=1
O88846	E3 ubiquitin-protein ligase RNF4 OS=Rattus norvegicus OX=10116 GN=Rnf4 PE=1 SV=1
P78317	E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens OX=9606 GN=RNF4 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR047134	Family	E3 ubiquitin-protein ligase RNF4	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23041	RING FINGER DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22651	RNF4; E3 ubiquitin-protein ligase RNF4	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala