Gene detail

Detailed information of evm.model.ptg000003l.142 in Aurelia coerulea

Genomic Location: chr1:3575914...3601636
NR annotation: XP_001625431.3, protein tyrosine phosphatase domain-containing protein 1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000003l.142

ATGGCAGACAAGAAAGGCGAAGTAAAATGGTTAGCAAGCCCACAAGCTCAAGAATGGCAAGAAATTCAACCTGCAGTGGATCCAAAATATTCAAAAATGGGAGAACGAATCAGGCACATCACACCCAGCGCTTTTCAATGCTCAATGTTTTGTGGTGGAAAACAGTGCAAGTATGATAATCCAGCAAAATGGAAAGAGGAAGACATGGCAATAAGAGGCCTTTATTCATCATGGATTACAGACAATATCTTGGCGATGGCCAGACCATCATCGTATGCAATGAAACAGTTCTCCGTCATTGACCAATTCAAAGCAAAAAATATTACAGCTGTGATGAACCTACAACATCCAGGGGAACATTCTAGTTGTGGATTTGGACTAGAAGAAGGGGGGTTTTCTTATATCCCACAAGAATTCATGGACCAGGATGGTGAGGATGACTATGGCGTTCGAGCATTACAATCAATTTTGGATATGGTAAAAGTGATGGATTTTGCTTTGATGGATGGGAAGGTTGCAATTCATTGTCACGCTGGGCTTGGTCGTACTGGGGTTTTGATCGCTTGTTATTTTGTTTATTCCCAACGGATGGGAGCCAATGAGGCCATACGCACTGTGAGAGCCAGCAGACCCAAAGCCATACAAACAAGAGGACAAATTGCTTGTGTTCGAGATTTTGAAAAGTATCTAAGGCCAATGTGGATTATATTTGCAAACACCTCCAATGAGCATAAACCTTTCTCCCTGACATATTTCTTAAGACGTCAAGCTCATATACTTCATGGTGAAGAGGAAAGAGATCTACGATACGTTCCAAAGATCGTGTTTACAGCCTGCCAGCGCCTACTGGACCTTGCTGGCATTGCCATCGAGCTGCGTCACATATCATTGCTTAAAAGGAGAGGTTTTGATGCCTCCTCTTTCACAGATTCATCGTCCGGGTTGTTATCAACTGACAAAGAAAACAAACTCTTACGTGTTATCTCCAATGAACAAAAGCGAAACTCTGACAGCGAGTTTCTACTGGGGCATATTTATAATGGTGGAGGCAGCAGAGATTGTCTAACTGATGAAGATGATATTTCTATTAATCGTGATTTTAAAGATAAAGTTTATTTTGATTCAAATGACGACGGTTCTGAAGTATCTGTTGATATGGACGAACTTAGGCCAGAGCGAGTAATCCAGCATTCTGCATCGGAATCTCTCTTGTTTGCAAACGGTCGAGATAAGACGAACGTTGCTACAGATTCAAACTGCGGAGGAGAAAAACACGTGCTTGCCTCAAAGAGCTACACTGAATTTGAAACTGCTCGAGCGTCTGACCCGAAGGAAACTTGTATCGTTCCAGACAATTTGACGAATGACAAGAGCAAATCAGAATTCGAGACGGTTTGCAGCGAACGAAGGCTTGTTAAAGAAGATAAACCTTTACTGAGCCAAGATAAGAAAGATTTGGCAAAGAACGTTATGTTTAGCAAACAAGATTCCAATGAAAATAGTATCATAAAAGATAGTAGTTTATATCTAAACGATTCACAGACTTCCAGCGAGATCAAAAGCTGTGAAAGTAGGCACTCTTTTGTTGCCAGTGAAGAACGATCCAAAAGGAGTATAGAATCGATAGACATTGATTTGGACACACTCACAGAAAATATTGCCGCCAGTCTCTCCTCAAATGCCTGCAATGGTCGCACGTCAGCTAAAGTCGATAAATATCGGGTTGACCTGAACAATTCAGACAAGACATGGGAGCAACTTGCCACAGAAAATGACGCATGTGTACTTTGTTGTCTTATTTGGAATTGGCTTGAGCACTTAGAGGAACCAGTTATAACTGACAATGATATAAGTCTAGCAAGAAGTATTGAAGACGATCCCGTGAGAGCTTTTGAATCATTAGACCGTGACAAAAGAAAAACGTTGCAAGTGATGCTGTTTACATTTTTAAAGCTAACCAAGTCTTCCAGCGATCTTAAAGATAAGACATTGCAGAAGATTGCAGCAACCTTTACAAGGGTCAAAGCATTACCTCGGAAAACCAGGTCAGAGAAAACAGCATTAATTACTGAGACTAATTCCGACCAAGGAAAGTTTGCAGGAAATTATGTTTATTTTTTGAACTTTATTCAGAAGCTCTGTACATCAGACGTATGTGAAATATGA

Transcript

evm.model.ptg000003l.142

Protein

Uniprot

Uniprot term	Description
A1L1R5	Protein tyrosine phosphatase domain-containing protein 1 OS=Danio rerio OX=7955 GN=ptpdc1 PE=2 SV=1
A2A3K4	Protein tyrosine phosphatase domain-containing protein 1 OS=Homo sapiens OX=9606 GN=PTPDC1 PE=1 SV=1
A7E379	Protein tyrosine phosphatase domain-containing protein 1 OS=Bos taurus OX=9913 GN=PTPDC1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049573	Domain	Protein tyrosine phosphatase domain-containing protein 1, PTP domain	Interproscan
IPR008936	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR050561	Family	Protein Tyrosine Phosphatase	Interproscan
IPR000340	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR020422	Domain	Dual specificity protein phosphatase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23339	TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18078	PTPDC1; protein tyrosine phosphatase domain-containing protein 1	EC:3.1.3.-	Protein phosphatases and associated proteins	ko01009	deepkoala