Detailed information of evm.model.ptg000003l.454 in Aurelia coerulea

Genomic Location: chr1:11912093...12015013
NR annotation: XP_012557946.1, neurobeachin [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P50851Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens OX=9606 GN=LRBA PE=1 SV=4
Q9ESE1Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus musculus OX=10090 GN=Lrba PE=1 SV=1
Q8NFP9Neurobeachin OS=Homo sapiens OX=9606 GN=NBEA PE=1 SV=3
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14844PH_BEACHPH domain associated with Beige/BEACHDomainInterproscan
PF02138BeachBeige/BEACH domainFamilyInterproscan
PF15787DUF4704Neurobeachin/BDCP, DUF4704 alpha solenoid regionRepeatInterproscan
PF06469DUF1088Neurobeachin-like, DUF1088DomainInterproscan
PF13385Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF20426NBCH_WD40Neurobeachin beta propeller domainRepeatInterproscan
PF20425NeurobeachinNeurobeachin alpha solenoid regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023362DomainPH-BEACH domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR000409DomainBEACH domainInterproscan
IPR050865FamilyBEACH Domain-ContainingInterproscan
IPR031570DomainNeurobeachin/BDCP, DUF4704Interproscan
IPR036372Homologous_superfamilyBEACH domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR010508DomainNeurobeachin-like, DUF1088Interproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR046851DomainNeurobeachin, beta-propeller domainInterproscan
IPR046852DomainNeurobeachin, alpha-solenoid regionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13743BEIGE/BEACH-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005829Cellular ComponentcytosolInterproscan
GO:0008104Biological Processprotein localizationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0019901Molecular Functionprotein kinase bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K24181LRBA; lipopolysaccharide-responsive and beige-like anchor protein-Membrane traffickingko04131deepkoala

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