Gene detail

Detailed information of evm.model.ptg000003l.541 in Aurelia coerulea

Genomic Location: chr1:14525937...14586723
NR annotation: KAF7727641.1, hypothetical protein EC973_007299 [Apophysomyces ossiformis]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000003l.541

ATGGATATGCTTGAACTGGATCAACGAACAGATTGCTCAATGGAGATAACCAGAAGTAGTATTTCCAAAAGCAAGACAAAGGAAAACTGTGGCTGTAAATTCATAATGCCGGTGATTGGATTTGAGTGTTATCTTTGCAAAGTGTTTATACGTAATGAGAATGATATCGAAGACCATGTTGGTACTATTCACCATCTGAATATCTACAAGATGCATTTGCAAGACCATGATCAGGTTCAAGATACCACCAGTCTAAATCAAAACGATGGCATTGGACAGTATTCAGAAGATGAATTCACGTCAGATGGGAATAACAATTTCAAAGCAGCTGCTGCTGCAAATTGCTTTGCAAGAAATTTGGTGTGTGATGGTGATTTTCCAGAAGACAAGGGTGCTGTAGTTAATAATACACACGTGCCAGAAATGTGGGGCACTTGTTTCAACGGAGTTGACAGAAGATTGGCAGAAAGTTTTTTTCATGAAACAAGGGATAGGAATACAACAAGGAGTGAAGTTTTTGATACTAGAAATAAAGAGCTGAATGATGAATTAACCATGCAGCATCTTGATGAGAATTTTGACGAAATTGATACACACAACTGTAATGGTCCAGTTGACAAGGATACTATGAAAGAAGTAGCAAGAGATGATGGATTCGAAAGAAGGCTCATGAAACTCGAAGATAGCCATATCGATAATGTTGATTTTAATGGGGATGCATTTTCAACTAAAGAACATGCGAGAGACATTGGTCAGTGTGGGGTAATGAATACGTCTTTGGAAAGAAAGCAAGGAGGGCATTACGATTGTTTTAACATCAAGCAAGAAGTGTACGATGCTGATGATGGTGATTTTGGTGCTATTAATGGTGGAATATTAGGGGGCAGTGATGATGACTTCAGTAATAACAATGAAAACAACAATGAAGAATTAATGCCACGATATACGAATGATCAATCACAGGCTGAAAGATCAAGAAACAGTGAAAAAGAAATGGCCTTGAAATTGATATTGGATGCTGGCTCATTACTGATTGCCGAGGAAGCATTTTCAATGACTGAATTGAGCAGAGGCAAAGAGTTGCCACCAACTGTCAACTCCAACACTTTAGAGAAACAAGATGTAAATGAAACTGCTGAATCAGATATTTCACAGAAGACGTCATTGACTCACTTAGAAACCAACCTGCAAATTGACGCACATGTCAAAACTGATATCAATACATGCAATGACACAAATGTTGAAGAAAAAGAAACACAACAAAACATTGCTATCACTGAAGCAGGAAAGGTGGAAAAAAACAAAGAAAAGGACAAACGATTCCACGGTGATGAAGATTCCAACAAGGGGAGCAAGAGTGAAATGGCACACAAACGATGCTCCAAGAAGCCCTACGTATGCACTACATGTGGGAAGAATTTTACTCGGCCACATAATTTAGTGCAACATGAAGAGATTCATAATGAAGAAAAGCCTTGTAACATCAAGCTTCAGTATACAACTACTCGGAACGGTCATGTAAGGGTACAAACATTTTATAATTGCAATTTTTGTGAAAAGTCATTTAGGCAAAATGGAGGTCGTAAGAGGCACGAACGATTACATACTGGAATTAAACCATTTTCATGCAGTGATTGTGGAAGGTCATTCCACAGAAATGAAAGTCATAAAAAGCACGAATCATTACATGATGGACGAAGGTCGTTTTCATGTAAGATCTGCGGAGAATCATTCAGACTGCGTAACGGGCTGAAAAGACACGGGCGAGTGCACGTTGCAAAAGAGCCATTTTTGTGTAACACATGTGGAAAGCCATTCAAATTAAAGGGAAAACTAAAACAGAGAGGACATCTTAAAAGGCATGAAAAAATACATCCTGGAGATAAACCATATCCGTGTACTCTGTGTGAAAAATCATTCAGAAGAAACAGCGATCTTGTAAAGCATACAAGGGTACATACCGGAGAACGGCCATTTTCCTGCAAGGTTTGTGGGAAAGCTTTCAAAGAAAATGGGCATCTTAAAGTGCATGAAAGAATGCATGCTGGAGTCAGGCCATTTTCTTGTAATTTTTGCGGAAAATCGTTCACATACGGTTCCGCGCTTAAAGTGCACGAAATGATACATCGTGGAGATAGACCATTTTATTGCAAAGTTTGCGAGAAGTCCTTCATAAAGAGTAGCGATCTTACAAAGCATGAAAGGATACATACTGGAGAAAAACCTTTTTCGTGTGAT

Transcript

evm.model.ptg000003l.541

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050527	Family	Snail/Krueppel C2H2-type Zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24388	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala