Gene detail

Detailed information of evm.model.ptg000004l.685 in Aurelia coerulea

Genomic Location: chr20:16321094...16354807
NR annotation: XP_047130028.1, ribosome biogenesis protein bop1-B [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000004l.685

ATGACAGATGTAAAAACAAAGAAATCAAAGAGGGCCGCCTCTGCAGCAGTAGCCAATGATGAAGACTCTGAAGCTAGTGACGAGAGTTATTATTCTGGGCTAGAGGAAGAAGATTCCTCCTCAGAAAATGAAGAGGCTTCCAGTGATGAGGAAAATAATTCTATAGGATCTGACGATAAATTTTCTGAGAATGAAGAAGATGATGAAGAACTCCCAACTCAAGAATCCGATGAGGACATCCCGATGGAGCCTTCATTCAATGTTGGCATAGCTGATGAAAGTGTAGAGGAAACAGTAGAACATGCTGCAGGGGAAAAGGAACTAAATTCTTCCAAATTAGGACAAGGTGGCATTGTAAAAATAGAGAGAATTGCAGATAATTTTGAAGATGCTGATACTTCAGATGAAGAGGAAATAAGAAACACAGTTGGAAATATCCCCATGGAATGGTACAGAGATTATTCACACATTGGATATGATGTTAGAGGAAAGAAGATAGTTAGACCAGCTCAAGGAGATGAGTTGGAGAAATTTCTCTCGATGGAAGACAATCCAGACTTCTGGAAAACAGTTCGTGATCACACTAACGAAGAGAATATAAAGCTCACTGATGAAGATCTGGAAATTATCAAAAATATTCAGACATCTCATTTCCCAGAACCAACAATGGATCCATATGAACCATACGTTGACTGGTTCACTGGTGACAAGATGCTTCATCCAATTAAGGATACACCAGCGTCGAAAAGAAGTTTTATGCCATCGAAGTGGGAGCAGCAAAGGGTAATGAAAATTGTGCGTGCAATAAAAAATGGATGGATAAAACCAAAACCTGTCAAAGATGAGAAAAATAAATATTATTTATTGTGGAGGAACGAAGAAAAGACAAAAGATCATCCAATGAATTGGCCAGCTCCTAAAATGAAACTTCCAGGTCACGACGAATCATACAATCCGCCACCCGAGTATCTGTTGAGTGAAGAAGAGGTGAAACAGTGGGAAGATCTTGACCCAGAGGACAGGCGAAAGAATTTTATACCAAAGAAATATGATTGCTTGAGAAAAGTTCCAGGATACCAAAGCTTTATACAGGAAAGATTTGAGAGGTGTCTAGATTTGTATCTATGTCCTCGGCAAAGAAAGATACGGTTACAAGTGGACCCAGAAGACTTGATACCGAAATTGCCTAAACCACGCGATCTACAACCGTTCCCATCAAGTGAAAATTTGGTGTATCGAGGCCACGAAGGAGCTGTCCGCTGCTTGTCTGTTGATCCCAGTGGCCAATGGCTTGTTTCAGGTTGTGAAGATAAAACATTACGATTTTGGGAAATCTCAACTTGCCGCTGCGTAAAGACGATTAAATTTGAAGAAACCGTCACTCTTGTTGAATGGAATCCAAACTCAAATATGTGCCTGCTTGCCGCTGCTGTTGGCAAGTCGTTGTACATAATAAACCCATACCTTGGAGACAAATTGATATCATCCAATACTGATAATACTTTGGCTGGTTCAGAAACTACGGTCGAAGATAACGACAAAATTTCATGGAAAGTTCCAACACTATCTGAGAGGAACAGGGGACTGAGAATTCATATAGTACACGAAAAGATCATTAAGCAAGGGTCTTGGCATGTGAAGGGAGATTATTTTGCTGTCGTGCAAGTTGAAGGTGGCAGTCAATCTGTCGTAATACACCAGCTAACTCGACGGAAAAGTCAGATTCCATTCAAGAAACCAGGTGGCCTTATTCAATGCGTCAAATTTCATCCAACAAAGCCTTTCCTTTTTGTGGCGACCCAAACTTTCATCCGTGTATACAACCTGCAGAAGCAGGAACTTGTAAAAAAACTTGCTTCAGGTACAAAGTGGATATCGAGTATGGCTGTTCATCCTCAAGGTGATAATTTGATAGTTGGTAGTTACGACAAACGACTGTGTTGGTTCGACATTGATTTATCAACAAAACCTTACAAAACTTTGAGGCATCATAAGAAGGCAATTCAGAGCGTGGCATTCCATTCTAAATACCCATTGTTTGCGTCAGCCAGTGATGACGGCTCTGTAATTGTTTGTCATGGAAAAGTTTTCAGCGACTTGTTACAAAATCCGTTAATTGTTCCAGTAAAGATTATCAGATGTCACAAGCCAATAGGTGATCACGGTGTTGCTGATTGTGTATTTCACCCTTCACAACCATGGATTTTCACTGCTGGTGCAGATAATACCGTTAAACTTTGCACATAA

Transcript

evm.model.ptg000004l.685

Protein

Uniprot

Gene family

Uniprot term	Description
A4IHS2	Ribosome biogenesis protein bop1 OS=Xenopus tropicalis OX=8364 GN=bop1 PE=2 SV=1
Q7ZXX9	Ribosome biogenesis protein bop1-B OS=Xenopus laevis OX=8355 GN=bop1-b PE=2 SV=1
Q7T0W1	Ribosome biogenesis protein bop1-A OS=Xenopus laevis OX=8355 GN=bop1-a PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF08145	BOP1NT	BOP1NT (NUC169) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR012953	Domain	BOP1, N-terminal domain	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR028598	Family	WD repeat BOP1/Erb1	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17605	RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0000463	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0030687	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan
GO:0043021	Molecular Function	ribonucleoprotein complex binding	Interproscan
GO:0070545	Cellular Component	PeBoW complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14824	ERB1, BOP1; ribosome biogenesis protein ERB1	-	Ribosome biogenesis	ko03009	deepkoala