Gene detail

Detailed information of evm.model.ptg000006l.171 in Aurelia coerulea

Genomic Location: chr3:2918587...2943202
NR annotation: XP_047125832.1, deformed epidermal autoregulatory factor 1 homolog isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000006l.171

ATGTCTGCACGTTTGGACGGTACATTATCGGTTGATTTAGCAACTTTGGCCGACAACGTCCCGAGCGATGGCGACGAGATTCAACAAGGGAAAAACACTAACGATTTTCATCACAGCAAGACAGGCCAACCTGATGATGATCAAGTCTTCAGTCGAAACAGCAACTTAGTCTTCAAATCAAATGATACGAATGGATTATTGGGAACTGCTGATCTTTTAACTTCGTCGGGATTCGAACCAAACAAGTCCATACACAACACACTTTCAGCAAGCAACTCAAATCTCCAGACGCCAAGCAATGGGCCTAATGATGTCATGAAAAATGGCGTCCTTGATAAAACGTCAGGCGCGCCAAACACACCCGTGTCCAGCTCTTCAGGAACACCGAGACGGCCTTCATACACTTCAAAAGCTCCAAGTGCCCTGAATACTCTCCCAGGAATCACAATCAGTGAATATTCACCTGTAAGATCAAATTTTGATGACGCTGCACACACACAAAGTTTGAATCAAATCAACAACCCTGCTAATTCAAGGAAACATTCGCTCCCATCTTTACATCATGCACACAGTAGTAAAGAAGCATGTATGCTCCCATCACAGTCAAGTTTTGATGAAAGCCTTGATGGCTACTCTAACCCTGGAACCCCATCATCAGTCAAAACAGACAGCCCTGCCCCCAGCCCCAGTGGTGCACAACCAGGGCACAAGAGAAGCCATGATGTTAGAGAGAGAAATAGAGTTTCGTTCAAAATGAAATGGGATGAAGCCGCAAAGAATGATGTCCTTCTTGTCAAATGCAGAGACACGAATGGAGAACTTCATAAAAGTAGACTTGGTTCTGGATCAAAAGGAAAATGCATCAAGGTTGACAACCAATGGTACACGCCAACAGAATTTGAACAATTTTCTGGCAGGGGTGCATGCAAAGACTGGAAACGTAGCATCAGATTTGCTGGACAAACCCTTCATCGATTGATTGATGATGGTATCGTTGCACCTCATGCAGTGTCATGTACTTGTGGTATCTGTTGTGGAGAAGAAATTATCTCACATCGTAGTTCAAATTTACAGAAAGGTGGCCCAGTAAAATTATTTGTGCCATATACAAAGGCCAAAAGAAAGAGGAGGGATGGAGAAGGCTCAGTGTCGAAAAGGATGTCAACAAGTGGTGAAGATGGTCTCAAAGATCTTCACAGAGGCAGGTCTTTCAGCATGGACTCGGAAGTTTTTCCATCCCTCGTACATCATGGTAATTTGACCGCTGGAGACCTGGATGGTGATGGCAACATGCCCCCAATGACGCCTCTTACCCCGATGACCCCCATCACCCCTATTACCCCATTCACCCCAATGACACCATTGACCCCTAATGCAGTGCGATCTGGGTCACCACCAAAAGCATCACATTTGGGAGCTGGCCTTGGACTACCAAGTATGGTTGTAGCAAGCTCCTCCGCAGCAAACTCAGCTATTTTGCGCCCACCCGCAACACCAACAAGATCACAAGCTTCCATGAATGACAACCCGTTGAGTAACACACATTGGATTCAACTCGAGGAGGCTGTTACATCTCTGATTAGTGTGGCCCAGCAGTTAAAATATATGATTGAACAAGCAAAGATACAATCCGATGCTCTCAAAGACACAGCAGTGACACAAGCAAAGATACAAGCTGAGAACGAAAAGCGCGAGGCAATCAACCAGATTCGTTTGCAATCAATTGCACAACTAACGCAAGCTTACGCAACTGTACAAGCTGAGAAAAATGATATACAAACTATGGATATGAGGCAACAGCATTTTACTATTGTTAAGAGCTGCCAAAACTGTGGCCGCGATGCTTTACTCGAATGCACTGGATGCCACAAAGTGTATTACTGCAGTCAGTTTTGCCAGAGAAAAGACTGGGTTAATCATCAGAAGATTTGTGGAGAGCAGCAGATGATGGGTGAAAATCATCAGAAGCTTGATGGTAAAAATGATTGA

Transcript

evm.model.ptg000006l.171

Protein

Uniprot

Uniprot term	Description
O88450	Deformed epidermal autoregulatory factor 1 homolog OS=Rattus norvegicus OX=10116 GN=Deaf1 PE=1 SV=1
Q9Z1T5	Deformed epidermal autoregulatory factor 1 homolog OS=Mus musculus OX=10090 GN=Deaf1 PE=1 SV=1
O75398	Deformed epidermal autoregulatory factor 1 homolog OS=Homo sapiens OX=9606 GN=DEAF1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01753	zf-MYND	MYND finger	Domain	Interproscan
PF01342	SAND	SAND domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000770	Domain	SAND domain	Interproscan
IPR002893	Domain	Zinc finger, MYND-type	Interproscan
IPR010919	Homologous_superfamily	SAND-like domain superfamily	Interproscan
IPR043563	Family	Nuclear body protein Sp110/Sp140/Sp140L-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46386	NUCLEAR BODY PROTEIN SP140	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23041	DEAF1; deformed epidermal autoregulatory factor 1	-	Messenger RNA biogenesis	ko03019	deepkoala