Gene detail

Detailed information of evm.model.ptg000006l.21 in Aurelia coerulea

Genomic Location: chr3:226690...252712
NR annotation: XP_027044959.1, poly [ADP-ribose] polymerase 1-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000006l.21

ATGGCTGATGATCTCCCTTTCAAAGCAGAATATGCAAAATCAGGAAGAGCTGCATGTAAAGGATGCAAGTTAACAATCGCGAAAGAATCACTCAGGATTGCCAAAATGGTTCAGTCAAGACATTTTGATGGCAAGCAACCAAGTTGGTTTCACTACAGCTGCTTTTTCAAGAAAAACAACCCAAAGCAAATGACAGAAATTGCAGGAGTTGATGCTTTGCGATGGGATGATATAGAGAAGGTCAAAGGTCATTTTAGTGGAAGTGCATCAACATCAGCTGCAAAAGGAAAAGATGAAGTGGACGCCCAACTAGCAAATTATCAATGTGATTATGCCAAATCAAATCGCAGTACTTGTAAAGTTTGTGAAAATAAAATAACAAAGGGGGAAATTAGAGTTGCCATCATGATGGATGATGATACAAAATTTGTAGGTGCAAAAATTCCAAAATGGCATCACCTTGACTGCTTTGTTGAAAAGAAAAAAGAGGAACCAGAATTATCAAACATTGCTGAAAATGATATCTCAGGTTTTAAAAGCATGAAGGCAGAAGATCAAGCTGAAATGAAAAAGGTTCTTGGATTGAAGAAAGCATCAAAGAATGACAAAAAGAAAACCAAAGAAGAGAAGAAACCAGCTGCAGAAGTGACAGAGGATGCAAAGTTGAAGGAACAGAATGATATGCTGTGGAAGTTACGAGATGATTTGAAGAAAAACTGTCATCAGCGATTGCTGAAAGACTTTTTGCATATGAATGAGGTTAATTCCAAAGGAGGAGAGAGTGATATTCTTGATAGATGCGTCGATGCTCTGGCTTTTGGAGCACCTGGACAATGTCCTGAATGTGACAATTCAAAACTTTGTTACAGTGCAAGTGGATACAAATGCTCAGGACATATTACTGCATGGACAAAGTGTCAATATATCACATTCAAACCTCCGAGAGAAGTTGTCAGTATTGACTATGAAATAAAAGAACAAAGTGAATTTTTGAATAAATTCAAGCCAACAGTCAAAGAGAGACTTTTCCCCAAGTCAATGAACGCATTCGATCCAGAGAAACCTCTCTCTGGCAAAAAATTGCTTCTGTCAACCAGCTTGAAAAAGTCAAAGAATAACCTTACTGAGAAAATAGAAGAACTTGGAGCCACACTTGTAACCAGCGTCGTTACTGATATGTTTTGCTTCATTTGCAGTGAAGCTGATGCAAAGAAGGGAACAAAGAAAACAGAGCAATTGCAAAGCAAAGGTATTCCAATTTTATCTGAAGGTTTTCTTGCTGAAGTCAAGAAAGGAAATGTGGACGCCATGATTAAGAAATTTGAGCTTCTTCCTACAAAAGCAAAGGCTGATGTTGTTGATGGGAAATCTGCCAAGCGAAAAGCTGCGGACCCAGTCAAATCCATCCTTTCTCCCAAGAAGGCCAAATTGACGTTGAAAGGCGGTGCCGTAGTCGATCCTGACTCAGGCCTTGAAGATACTTGCCATGTTTATGAAAAAGGTGGCGATGTTTATAATGCTGTTCTTGGGTTGGTCGATCTTACTAAAGGAACAAATTCATATTATAAAGTTCAAGTCCTCGTCCATGACACTGCCAAAAAATACTATGTATTCAGGTCCTGGGGTCGTGTGGGCACAGCAATTGGTGGAAACAAACTTGAGAAATTTTCCTGCCTAGAAGATGCAACAAGCAGCTTCATAGAAGTTTTTGAAGAGAAAACAGGAAACTGTTGGTTCAGACGGAAAGACTTTGTGAAGCATCCTTACAAATTTTATCCTTTGGAAATTGACTATGGACAGGACGATGATAACTTGAAACAGATGAAAATGGAAGTTGGTCAAAGTTCGAAACTGCCAATTGAAGTTCAACAACTTGTGAAAATGATATTTGATGTGGAGTCTATGAAAAAAACAATGGCAGAATTTGAGATTGACTTGAACAAAATGCCACTTGGAAAATTATCAAAAAGACAAATTGATAAAGGATATGCAATCCTTGGCGAGCTTCAAAAGTGCATCGATCAAGGTAAATCAGACACAAAAATCCTTGATGCATCAAACAGATTCTATACATTGATTCCACATGATTTCGGAATGAAGGCTCCTCCCTTGCTGAATAGCACAGATATGATCAAGGCCAAGATGGATATGCTGGAGAGTTTAATGGACATTGAAGTTGCTTACAATTTATTGAAAGGTTCAGTGAACACAGGGAAAGACCCGATCGATGTTCATTATGAAAGTTTGAAAGCTGACATAAAAGTTGTGGACAAGAAAACTGAGGAATATAAATTAATTGAAGATTATGTCAAGAATACTCATGGATTTACACACTCAAATTACACCTTGGAGATTGTTGACCTTTTCTCGATGGATCGAAGTGGTGAAGAAGGCAGATATAGTCCATTCCGTGAATTGCACAATCGTAAACTTCTTTGGCATGGATCAAGAAAAAGTAATTTCGCTGGAATTATCTCACAAGGATTAAGAATTGCTCCACCTGAGGCTCCTGTAACTGGCTACATGTTTGGAAAAGGAATTTATTTTGCAGATATGGTTTCAAAGTCAGCTAATTATTGCCACACAAGTTCTTCGAATCCAATTGGTTTAATGCTGCTTTGTGAAGTTGCTCTTGGAAATATGTATGAACTAAAAGGAGCAAGAGCAATTGAAAAACTGCCCAAAGGAAAACACAGCTGCAAAGGCCTTGGCAAAACATGCCCTGACCCGGCAAAAGATCACACTTTGCCTGATGGCGTCGTCGTTCCAATTGGAAATGGTGTCGATGTACCCATGCAAAACAGTTCTTTGTTATACAATGAATTCATTGTTTATGACGTGGCGCAAGTTCGAATGAAATATCTGCTTAAACTGGACTTCAAATACAAATGGTAA

Transcript

evm.model.ptg000006l.21

Protein

Uniprot

Uniprot term	Description
P26446	Poly [ADP-ribose] polymerase 1 OS=Gallus gallus OX=9031 GN=PARP1 PE=1 SV=2
P27008	Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus OX=10116 GN=Parp1 PE=1 SV=4
Q9R152	Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus OX=10029 GN=PARP1 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02877	PARP_reg	Poly(ADP-ribose) polymerase, regulatory domain	Domain	Interproscan
PF21728	PADR1_N	PADR1, N-terminal helical domain	Domain	Interproscan
PF00533	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF08063	PADR1_Zn_ribbon	PADR1 domain, zinc ribbon fold	Domain	Interproscan
PF00645	zf-PARP	Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region	Domain	Interproscan
PF00644	PARP	Poly(ADP-ribose) polymerase catalytic domain	Family	Interproscan
PF05406	WGR	WGR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001510	Domain	Zinc finger, PARP-type	Interproscan
IPR004102	Domain	Poly(ADP-ribose) polymerase, regulatory domain	Interproscan
IPR036616	Homologous_superfamily	Poly(ADP-ribose) polymerase, regulatory domain superfamily	Interproscan
IPR008288	Family	Poly [ADP-ribose] polymerase	Interproscan
IPR050800	Family	ADP-ribosyltransferase diphtheria toxin-like	Interproscan
IPR036957	Homologous_superfamily	Zinc finger, PARP-type superfamily	Interproscan
IPR049296	Domain	PARP1-like, PADR1 domain, N-terminal helical subdomain	Interproscan
IPR001357	Domain	BRCT domain	Interproscan
IPR008893	Domain	WGR domain	Interproscan
IPR012982	Domain	PARP1-like, PADR1 domain, zinc ribbon fold	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR012317	Domain	Poly(ADP-ribose) polymerase, catalytic domain	Interproscan
IPR036930	Homologous_superfamily	WGR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10459	DNA LIGASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003950	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0051287	Molecular Function	NAD binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0070212	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:1990404	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24070	PARP1; poly [ADP-ribose] polymerase 1	EC:2.4.2.30	DNA repair and recombination proteins	ko03400	deepkoala