Gene detail

Detailed information of evm.model.ptg000006l.271 in Aurelia coerulea

Genomic Location: chr3:4996764...5027900
NR annotation: XP_022799629.1, transmembrane and TPR repeat-containing protein 2-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000006l.271

ATGACTGCAACAAGGATTTTTACAAGCAACGAGCGTGTTTGGGCAATATTTATCGTATCTTTTGTTGGATTGATCTGTTACTTGAACACATTGAAAGCTGGCTTTGCATATGACGATAACCGAGCAGTCCTAGAGAATTCTGACATACGCACAAGTTCACCATGGATGGATGTCTGGTACAACGATTTCTGGGGGACACCATTGTCCCACAGTGGCAGTCACAAGTCATACAGACCCCTTACAGTGCTGAGCTTCAAGCTCAATTACATAATTGGGGAATTAAATCCGCTGGGTTACCATTTGGTTAATGTACTTCTCCATGCAGTAAATTGTGGACTGTTCTCGCTGCTTGCTTTGTATTTGTTTGGAAACATTTCACAGTGCCTTGTGGCTGGTCTGCTTTTTGCTGTTCATCCAATACATACAGAGGCTGTTGCTGGTATAGTGGGCCGTGCTGACGTCGCATCAGGCCTCTTCTACATGCTTTCGTTACTTGCATACATTCGAGCAACAAACCCCCCTACAGTCTGCACTTTTGGTCAAAGTATTCCAACGACGGATTGGAAATATTTCATGTTTTCAATAGCATGCAGTGTCGCGGCAATTCTCACAAAGGAGATGGGTATTACTGTACTTGGTGTCTGCCTCGTTTATGATGTCATGCTTGTACTGAGACTAAGGCTGGATCGTTTCTCGCTGATATTTGCAAATGTAAGATCAACAGGCACAATTACTCGAGTAACATTATTACTACTTGCTGGGTCTTTCATACTCTTTTGGCGCTGTTACATCATGCACTTATCAACACCAACTTTCACTGTTTCTGACAACCCAGCAGCGAGTCACCCAGATGTCAGAGTGAGGCTGCTTACACTTCTGTACCTCCCTGCAGCCAACATTTGGCTTTTGGTGTTTCCATGGCAGCTGAGTTTTGATTGGTCAATGGATGCCGTTCCTTTGATTGTGTCGATCAGTGATTTTAGAATTCTGGCAAGTTTGATGTTTTATAGTTCACTTGGATATTTAGGTTTTAGATATATCAGAGATTTAGTTTTTCAAAAGTTAGGATATGACACAGATAGTGAATCCTATACCGACTCGGATTCGTCGAGTGCTTCGAAGAAAAATGGATTTAAAAAAAAGCAAAAAGCTTTTAACAAGTTGAATTTTAATGTGGACGCTGATAATTATTTACCCAGTGGTGGATTCAAATTCAATTGTATGCAGGCAAACAGTCCAAATGGATATTTAGATGCATTACAAAATGGTGGGAAACTGCAAAATGGCGTGAGCAAACAAAATGGACAAAATGGCCTAAGCAAGCAAAATGGCCCAGACAAGCCAAGTGACCTGAGAATACAAAATGGCCTGGACAAGCAGCACAGTATTACTCCAAGTAATGCAAACCACAATCATGGTCCCCATAGTCATGGAGTGGAAAATGGTTTGCCATACAATAATGGCGGGAAAAATTCCTCCTCCGAGGACTCAGCTTGTTCTGGGACTTTGGCCATCAGAAGCAAGAAACTTAGAAGAAGGCCTAATGCTTATGCTGGAAATAGTCAAGACTGGAGAAAATTTCCGGCTATAGAATCCTTTGACGAAGATGATCAAACCCAAAGTCGCTTTGGCTTTTCTTGTTTCCTTGGCACGGACGAAAATCTCTTCGAAGATTTCGACTCTGTCATATTTTACGTCGCAATGCTCGTAATATCGTTTCTTCCCGCTACGAATTTGCTGTTTTACGTCGGGTTTGTGATAGCTGAAAGGATTTTGTATATTCCAAGTATGGCCTATTGTTTGTTGATTGCTTCTGGTTTGGGAATACTGTGGAATCGCCGACCAAGGCACAGGACACTTTTGAAATATGGATTTATTGTTTTTATTGGATTGTTAGCTGCAAGGACAGTGGTGAGGAATGAGGATTGGAAAGATGAAGAGGCTTTGTACAGGTATGTAACACTTCCATGGGGAAATCTAGGGAGTATCATGTCACAACAGGGAAGAATTGCAGAAGCGGAAATGGCATATCGAAAGGCTATCGAGGCCAGACCCAATATGGCTGATACGCATTATAATTTGGGAATTTTGTTACAAAAGATGAAAAGATATGATGAGGCAGCTAAAGAATATAGAAATGCAATTGAATACAGACCAAGTCTTGCATCTGCATATTTGAACCTTGGATTGTTGTACGATGAGACTGGACGTCAACAAGAAGCACTTCAGATTTTGGAAAGTGCAAGAAATTTGAGTGAGCATGGCTTGAGGAATCCAAAAGCTCATCAGCATTCGTTGACGTCAATTCGATACAACATTGGGAAAATATTATTCGATCTCGGAAGATACAAGGAATCAGCCACAACATTCCACGACACCATTGATAAAATGCCAAATTCATACAGCCCTCATAGTATATACAATATGCTCGGCCAGGCGTATTCATATCTTGGAAATAGAAACGAAGCTGAGTCATGGTATCAGAAATCATTGCATGCAAACAGTACCCATGTTCCTGCTCATTTGACGTTTGCCAGACATTTGGCTGCCATGGGTAATCATGAAGGAGCCGAAGAGTGGTTTACCAAAGCATTAAAACTACAACCCAGCAACTCAGATTCTCATTTTCATTATTCGGAGTTCCTTCTAGCAAGAAACCGTCAACGAGAGGCTCTTGCTGAAATGGAGGTTGCTGTTAATTTGAATCCAAACGAAGTCGATTTAGTAGTTTTTACTGCTTCACACTTTAGGGAGGCTAAGATGTACAACAAAGCAGAAATATTGTACAGGAAAGCAATCAAACTGAAACCAAATGTTCCTAGCCATCACATGAATCTTGGTGCATTATTCCACCTTACGGGGAGGCTTGATGAAGCTGAGGTCAGCTACTTAGAGGCGTTGCGACTGAAGCCTGATGATGATTTAACACAGAACAATCTACCCATGATGAACAATGTCAATAAAACCCCAGAAGAGAAAGACTCCATCACACGTAGCATCCCGATGAGAAGGGTTGTCGTGCAAGACCCCTCGCATATGCCTTCGAATTATTCAGAGACTCCCGGAGGAACTTTGTTTTCGACAACACCAGGAGGTACCAGAATCATCTATGAAAGGAAGTTCTTGCTTGACTTGAAAAACTCACCTTTATCAAAAACGCCAACTAAGCTGCCAGTAATCCCTGGAGTGACTCTTGATGATAATGGTAAAATCATTGAAGAGGAAGAAGAGGCCAATGAAAACGAAAAGAATAACATAAATAAACAAGTCAAAGCTGTGCCAATGGAAGAACAAAATGGAAATGATCCCAAGAAAAGCCATGGTGACATGCAGTTTGACATGGACATCTGA

Transcript

evm.model.ptg000006l.271

Protein

Uniprot

Uniprot term	Description
Q8N394	Protein O-mannosyl-transferase TMTC2 OS=Homo sapiens OX=9606 GN=TMTC2 PE=1 SV=1
Q56A06	Protein O-mannosyl-transferase TMTC2 OS=Mus musculus OX=10090 GN=Tmtc2 PE=2 SV=1
Q6DCD5	Protein O-mannosyl-transferase tmtc2 OS=Xenopus laevis OX=8355 GN=tmtc2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF08409	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF05456	eIF_4EBP	Eukaryotic translation initiation factor 4E binding protein (EIF4EBP)	Family	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013618	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan
IPR008606	Family	Eukaryotic translation initiation factor 4E binding	Interproscan
IPR052384	Family	O-mannosyl-transferase TMTC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44216	PROTEIN O-MANNOSYL-TRANSFERASE TMTC2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008190	Molecular Function	eukaryotic initiation factor 4E binding	Interproscan
GO:0045947	Biological Process	negative regulation of translational initiation	Interproscan
GO:0000030	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0035269	Biological Process	protein O-linked mannosylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23424	TMTC; protein O-mannosyl-transferase	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala