Genomic Location: chr3:302054...322594
NR annotation: XP_047126355.1, coatomer subunit alpha-like [Hydra vulgaris]
| CDS | |||||
| evm.model.ptg000006l.29 | |||||
| Transcript |
| evm.model.ptg000006l.29 |
| Protein |
| evm.model.ptg000006l.29 |
| Uniprot term | Description | ||||
|---|---|---|---|---|---|
| P53621 | Coatomer subunit alpha OS=Homo sapiens OX=9606 GN=COPA PE=1 SV=2 | ||||
| Q27954 | Coatomer subunit alpha OS=Bos taurus OX=9913 GN=COPA PE=1 SV=1 | ||||
| Q8CIE6 | Coatomer subunit alpha OS=Mus musculus OX=10090 GN=Copa PE=1 SV=2 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF06957 | COPI_C | Coatomer (COPI) alpha subunit C-terminus | Repeat | Interproscan |
| PF04053 | Coatomer_WDAD | Coatomer WD associated region | Repeat | Interproscan |
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR010714 | Domain | Coatomer, alpha subunit, C-terminal | Interproscan |
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR050844 | Family | Coatomer complex subunit | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR019775 | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR020472 | Repeat | G-protein beta WD-40 repeat | Interproscan |
| IPR006692 | Domain | Coatomer, WD associated region | Interproscan |
| IPR047312 | Domain | Coatomer subunit alpha, WD Associated Region | Interproscan |
| IPR016391 | Family | Coatomer subunit alpha | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19876 | COATOMER | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005198 | Molecular Function | structural molecule activity | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0006886 | Biological Process | intracellular protein transport | Interproscan |
| GO:0016192 | Biological Process | vesicle-mediated transport | Interproscan |
| GO:0030126 | Cellular Component | COPI vesicle coat | Interproscan |
| GO:0006888 | Biological Process | endoplasmic reticulum to Golgi vesicle-mediated transport | Interproscan |
| GO:0006890 | Biological Process | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | Interproscan |
| GO:0006891 | Biological Process | intra-Golgi vesicle-mediated transport | Interproscan |
| GO:0030117 | Cellular Component | membrane coat | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K05236 | COPA, RET1; coatomer subunit alpha | - | Exosome | ko04147 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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