Gene detail

Detailed information of evm.model.ptg000006l.394 in Aurelia coerulea

Genomic Location: chr3:7990468...8001006
NR annotation: XP_002160185.2, deoxyribose-phosphate aldolase [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000006l.394

ATGGCTGCTAAATTGGAGCGGAATCCTGGAGTTGTTTTTGACCCAAGCTGGATTGGCAATGTGCGAATTAACTATGCTTGCACAAAGGCAAGAGGAGAGACTCTTGGTACAAGAAGATCGATAAAGAAGGAGTGGCAAGCTGCTTGGTTACTGAGGGCAATCACTTGCACTGATTTAACAACGCTGTCAGGTGATGATACAGCAGGAAATGTAAGGAGGTTATGTTTCAAGGCACAAAACCCAGTGAGGCAAGATCTTATTGATGCAATGGGTGTTAATCATCTTGGTATCACCTGTGGTGCTGTTTGTGTATATTCATCAAGAATACGCGATGCAGTCAAAGCATTGCAAGATGCCAGATCATCAGTGCCAGTTGCATCCGTTGCAGCTGGGTTTCCTGCTGGGCAAACTCCACATTCAATAAGACTTCTGGAGATAAAAAATGCAGTTGCAGATGGTGCCAATGAAATTGATATTGTAATTTCTAGATCTCATGCTCTGCAAGGAAACTGGGAAGCAGTCTACCAAGAAGTAAAAGAGTGCAGAGAAGCATGTGGAGATGCACATCTCAAAACAATCATAGCTACTGGAGAGCTAGGTTCCCTTGAAAATGTTTATAAAGCGTCTATGGTGTCAATGATGGCAGGGTCTGATTTTATCAAAACATCAACTGGTAAAGAAGGTGTAAATGCAATCTTTCCTGTTGCACTGGTCATGGTGCGATGTATTAGAGAATATCTCGAGCGTACTGGATACAAAGTTGGTTTCAAGCCTGCAGGAGGCATTCGCAGTGCCAAGGAAGCCCTTGTATGGCTATCTATGATGAAGGAAGAACTTGGTGATGAATGGACGAAGCCACATTTATTCAGAATTGGAGCAAGCTCGTTGTTGACTGATGTTGAGAGACAACTCTATCATCATGTTTATGGAAGGGCATTTGAAGTGTTGTTTGTTGAAAAAGGCAAACATTTACTTGAGAGCGAAAGATATCGGAAAGCCGATGCCTTTTTGGTCTTGTGGTCTCGGCTTGTCGATATCGTCCTGGCTGCTAACGTAACAGAGTGCAGTAGTCGCCCCAACAAATGGCATGTATCTGCCATGATGGACCATTCTTCAAACGGAAAATATTCAACAACAGTCCCACAACAAATTTCAACCTCAATGATAAAACAAGAAACAACATGTGACAAGACAGACGAACAAGTTACAAATTCAATACAGCATGAAAAATACTCTGACCCTAATAATGTTGACGGAATAATTATCTGCAATGGAAATGATGTGAAAATTAAGACTGAAGAGGTAACTGATGAAATATTTGAACATGGAGATACAGATGCTAGATATCTTAACGGTGATGTGACAACTTACGTTTGTGATGTATGTGGTGAAGGATTTTGTGAAAATAGCAGTCTTGATTCACACAAGCAAAACACTCACATTCTATATTCTAGAGAAGATGATCTGACAACCTATGTTTGTGATATATGTGGACAGGGATTTAACGAAAGCAACAGTCTTGATGCACATAAACACAACTTTCATTTTAGACAGAAGTCTTATTATGTTTGTGAAGTATGTGGAAAAGAGTTTAGGGAAGGTTCTCAACTCAACAGACATACCAGGATCCATACTGGAGAGAAACCATACACTTGTGAGTTCTGTGGAAGAGAATTTAGGCACAGTCACCATCTCACTGAACATAGACGAATTCATACTGGAGAGAAACCTTATTTTTGCGAAGTATGTGGAAAGTTATTTAATCGAAGTGGCAGTCTCCTTAGACATAGACGAATACATACTGGAGAGAAACCTTACAGTTGTGATATTTGTGGAAGCAGATTTAGTCGAAGCTGCAGTGTCATTTCACATAAACGAGTTCATACTGACGAGAAGCCGTATGGTTGCGGTATTTGTGAAGAGAGGTTTAATGACATTAGTGGTGTTATAAGGCATGAACGAACTCATCCAGGAGAGAGACCATACATTTGTGATATATGTGGGAAAGGGTTTGAAACAAATAGAGATTTTGATGTACATAAACAATTACATATTTGA

Transcript

evm.model.ptg000006l.394

Protein

Uniprot

Gene family

Uniprot term	Description
Q9Y315	Deoxyribose-phosphate aldolase OS=Homo sapiens OX=9606 GN=DERA PE=1 SV=2
Q3T0V9	Deoxyribose-phosphate aldolase OS=Bos taurus OX=9913 GN=DERA PE=2 SV=1
Q91YP3	Deoxyribose-phosphate aldolase OS=Mus musculus OX=10090 GN=Dera PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01791	DeoC	DeoC/LacD family aldolase	Domain	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR002915	Family	DeoC/FbaB/LacD aldolase	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR011343	Family	Deoxyribose-phosphate aldolase	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23235	KRUEPPEL-LIKE TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016829	Molecular Function	lyase activity	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0004139	Molecular Function	deoxyribose-phosphate aldolase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0009264	Biological Process	deoxyribonucleotide catabolic process	Interproscan