Gene detail

Detailed information of evm.model.ptg000009l.313 in Aurelia coerulea

Genomic Location: chr13:17801995...17817391
NR annotation: CAB3993964.1, tumor necrosis factor alpha-induced 3-like isoform X2 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000009l.313

ATGTCACAATGCACTGAAACATGCGAGGCACAAGGCAGATTTATACAAAGTAAAGAAAAACGTATTGGGACATTCACCTTAACCAAGATGGCGGACACTACAAATCAAAGGATGGTGCGAAGTTTTTCATCCAGCAATCTTCATGCAACGAAACGAATTCATGAATATATTTCAAATCAAGAGCGAAACCCAGGCTACGGAATGAATCTAGCAAGAGAAGTAACAAAGTCTTCAATGATCATCCCTACGTTCAATAAAATGATGGAAATTGACCCTCGACTCGCTCGCTACACACTTGGCCTAGTTACAGACAACAATGCATTGGATGCCATGGAGAGAGATGACGTAATCAATTGGTGCATGCCTTCAAGAACGTTGGTACCGCTGACCGTTGATCCAGATGGCAACTGCTTGATGCATTCTATATCCGTTTATATTTGGGGCGTTCATGACAGGAGGTTGAATCTGAGACGTTTCTTACATCGTAAACTGGTTGGCGAAGACCGTTTTGACGGGAAGATATACCTCCGATGGAAATACGAACAGGAGAAAGCATTGCATACAATACAGACAGGGTTTGATTCATGTGAAGTTCGAAGGGAATGGGATACGGTGGTAGATGGTGCTTCCCTCATGGAATACCCTCGAGGTAACCACGGCCAGAAATACCTCCCTCTCGAAGACATACACATCTTCGTCGCCAGCAACGTCATCGCAAGGCCAATCATTGTTCTGAGTGACAAAATCCATCGTGGACCAGATGGCAGATCATTGCAGCCAAATCAGATCAGTGGAATATATCTGCCATTGTTACGGAATCCAGCTGAATGCGAGAAGTCTCCAGTCATCATTGGGTATCTACAGGGCCACTTTGTGCCGCTCTTGAGTGGCGAGGATCACAAGATGCCTGTTTCAGATCGTGCAATTCACCCAGATGCACAACACTGTGTCCCACTTGTCTACAAGGATCTTTCAGAGATTCCAATTCGATTTACCCAGGCTGAAGAACAGCGAGATGATCTTTTGAACAATTATCTTGATTGTTTTAGTATCCCTTTACAAGACCAGCGCACTGTTCCTGCTGTTATTTTGAAGTTCAAGCCCCCACCGGCATGGTCTGTGGAGCTGATGTGGAGTCTGTTTGCTAAAGCACAACAAACCTTCTTTGCTAATGTCACGACGTCTAGCGTGCAAGGCAGTGAATACAACAATGGCCCACGTGTCTCTGTAAACACACAAGTGACCGGTCATCCTATCATCAATCAAGCTGCCTCATCACGCATTCCAGACCCACCGTCTTCATCTTCGCAAACTCAAGCACCAACCAGTTCTGGATACAGATACAAAGATGACGATGCTGTTAATGGATCGATTCATAGTCAGAGTGATAGGCCATGCATTGGAAGGGGTTATGGTTGCCGAAACTTGGGCGAAGTGAAATATCAAGGGATGTGCAGAGTTTGTTTTGAGGACATCGTTAGCCCGGCAAATACACGTGCAACTCGAGAAAGATCAGAAGTTATGATTGAAAAACGAGTCCCTACCAGTGCGTACAATCATCCAGCGAGGAAGATCGATCCTCCTGCTCAAAATAGGAGACCTGATCCGATGGGACCTCAAGGATATGGGGCTAATGCATCCTTGAGGAATGTGGGAGGTGAAAAATGTATCATTTCCAGCTGCAATAGACGAGGAAATGCTGCGTTTCATGACATGTGTAAGGAATGCTTCACGACCAAGATCGAGGAGCAGGTGGCAGAGGCAGCGCCTAATTTGAAACATGCAACAGCCGAAGATCAACGACAGGACCAAGTCCAGAATCCACCGAAATCGAGAATAGGAAAGCTCCTTTGTGCCGATCCTGGGTGTCAGGAACAGCCAAGTCCTGGAGAAGACAAGTGCGCTAATTGTATTGGCAACCGCCAAGACATGCCGAAATGCCTCACAGAGAATTGTCAGAATAGAGCAGTGGACAAGGAATTTTTCCTCTGTGAAGAATGTAGGAGGAAGCAGGTGCAAGCTGCTGTAGAAGAGCATCAAGAACCACGCACCGATGATATTGGATTTCAAGCACCTGTTGTTTACCCTGCATACCCCCCTGCAACAAGGCCAATGACCAGCACAACTGCAACAGGTAAATACGACACACCAAAATGGCAGGAAGCACACGGAGGAAGAAATCCTCACGGAGAGAGACTTGATCAAGGAGAGCGACCTCTTCGAGGAGAGAGACCTCTTCAAGGAACTGGGCTCTGCAGATCAACGTATTGCGATCATTTCGCAGCTCCGGATAAAGAGGGTTTATGCAATGAATGTTTCGCATATGGAAGGAGATCCCCTCAAGGAGGCAGATCTCCTCAAGGAGTCAGATCTCCTCAAGGGGGAAGACCTCCTCAAGTATTTGGCCTAGAAGAAAGACCTCTGCAAGGAATCGGTCGTCAAGAAAGGCCTCCTAAAGGAAACGGCCTCTGCAGAGAAACGCTTTGTGAACATTTTGCAGCTCAAGATAAGGATGGCCTATGTAATGAATGTTTTTCATTGAAGCTGCAATTTCGTCAAAATGAGCAACCAGGCCATAAATGCCGTAATCCAAGCTGCACAAACAAAGGCGATCCTACTCTTGCGTTCTTTTGTCAAAATTGTTTTCCAGATACTACAAGACTGCCCCGAGGAGACGGACAGCCAATTCCAGGCTCCCCACATTCTCCTCGAAGCCCAAGCGATGGCCAGTTGCCAGCAAGTAGCCGCTATCCTGGAATACCACAGCAGATGCCTGTAGGACAAGGGCTTGAACCACGAAGATCACCAGTGGATGGTATTGAGCAGCCAATGTATGGAAACCTACCTGCATCATCGTATTTAGGTGATTTCGAGCTGCGCCACCCCCCGTCTTCAACTGGACAACCGATGTATGGCACTGCTCCTGGTCGAACACAGCTACAGAGATCGCGTGATAGGCAAAGCGAGTCTGGAGGGATTGTCAATACTGCATACCAGCCAGGTCTTTATTCAAATACGGGGAACGAAAGGAATAGAGGTGAGGAAACGAATTGCGTCATGGGTGGCTGTAGAAATAAAGCGGAAAGAGGGAAAAATGGCTTATGTAATGCATGCTTTGAGCAGTCTGTGAAAGAAGAAGAACTTATTTCTGCAGCAAATCGATACAAGAAGCAGCAGCAGCAGGCAGAGAGGGTTCAAAAGCTCCCAGCAGACAGCCCATACCGGAACCCAGTACCGTGCAAAACCATGGGGTGTCCATTCGTTCGTAGTGCAAACAGTGAATATTGCGACAACTGCTCAAGGCGTGGCCATGGAACGAATCCATCAGACCTTGCAGCCAGCCAACCAAACTTGGTCAATTCCCAGGCTAACTTTGTGAATAACCAGTCAAGCACAGTGAACAACCCTCCTGGAATCTCAAGTTACAGCTCAGCCATCACGAACTCTGGTTATCATAGTTATGTTAATGCGCCAATGCCAGCAGTAAGTGCAAGGGATCCAGTTGGAGGCCAGAGGGCAGAAGACCAGGGGGCAGGAAACCAGGAGGCAGGAAGACGTCGAAATCAAAGTGTCAGCGGCTACATTGGAATGGCAAATCAACAAAGTCAACAATGTGCAACGCCGTTTTGTGAGTTCTTTGCAAGTGGTGAATTTGGACCCTACTGCTCAAAATGCTTCATGGACAGAACAAAAGGAGACGCAAGATCTGCTATTGATACAGAAATAAGAAGCAACTCAGACATGGGTATGAATCGTTATAACCTTGGTAGAGGTCCAGTGGAATCTGGTAGCTACTCTCTACCCGGCAGTGCCTCTGCGATGCCATGTCGAAGTGTAGGCTGCACATTGTTTGGGAGGCCAGAAAGAAATGGCTACTGCAGTCAATGTTACGGTCATTGA

Transcript

evm.model.ptg000009l.313

Protein

Uniprot

Gene family

Uniprot term	Description
Q60769	Tumor necrosis factor alpha-induced protein 3 OS=Mus musculus OX=10090 GN=Tnfaip3 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	DUB\|OTU\|OTU
Ubiquitin Family	UBD\|ZnF\|ZnF_A20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02338	OTU	OTU-like cysteine protease	Family	Interproscan
PF01754	zf-A20	A20-like zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002653	Domain	Zinc finger, A20-type	Interproscan
IPR051346	Family	OTU Domain-Containing Deubiquitinase	Interproscan
IPR003323	Domain	OTU domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13367	UBIQUITIN THIOESTERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007010	Biological Process	cytoskeleton organization	Interproscan
GO:0016477	Biological Process	cell migration	Interproscan
GO:0030177	Biological Process	positive regulation of Wnt signaling pathway	Interproscan
GO:0035523	Biological Process	protein K29-linked deubiquitination	Interproscan
GO:0070530	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0071947	Biological Process	protein deubiquitination involved in ubiquitin-dependent protein catabolic process	Interproscan
GO:1990168	Biological Process	protein K33-linked deubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11859	TNFAIP3, A20, OTUD7C; tumor necrosis factor, alpha-induced protein 3	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala