Gene detail

Detailed information of evm.model.ptg000016l.2 in Aurelia coerulea

Genomic Location: chr17:20901842...20932336
NR annotation: XP_047134606.1, RNA polymerase-associated protein CTR9 homolog [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000016l.2

ATGGCGACGTCCATCGAAATTCCCTTGAAAGATTCAGATGAGGTGATTGAACTTGACTTTGCTGAGCTCCCAGTTGGTGAAGAAGTCTTGAGCATATTGCAACAAGAAAATGCACAACTCCATATATGGATCACTATCGCTCAACAATACTACAAACAAAGCGAAACAGATGATTTCGTGAAGATCCTTGAAGCCGCACGAACAGGCAACTTCTCTGGATCCAATTTGGAATACGAAAATCATGATAATGATCAGATGTTGGTACTTGACACATTAGCTGCTTATTATGTGCAACAAGCACGAAAAGACAAAAATAAAGACCAAAAAAGAGAACTTTTCACCAAAGCAACTCAATTGTACACTACAGCTGATAAAATCATCATGTTGGACCAGAACCATCTTCTGGGCCGTGCATACTTCTGTTTGTTGGAAGGAGACAAGATGGATCAGGCAGATGCCCAGTTTAATTTTGTTTTGGATCAGAATTTAGTTTCATTTTTTATTTTTACAGGGAAAGCATGCATATCGTTCCAGAAAAGAGATTTCAAAGGAGCGCTGGTTTATTATAAAAAAGCGTTAAGAACTAATCCAAACTGTCCTGCTGAAGTTCGACTTGGAATGGGTCATTGTTTTTATCGTCTCAATCGTCTCGAAAAAGCAAGGCTTGCATTTGAAAGAGCTTTAGAACTTGACCCGAGATGTACTGGTGCCTTGGTTGGCCTTGCCATATTGGAACTCAACTCCAAAAAGCCCGACAGCATCAAAAACGGAGTTCAACTGTTGTCAAAAGCATATTCAATTGACAACCGAAATCCAATGGTCCTAAATCACTTGGCAAATCACTTCTTTTTTAAAAAGGATTACACAAAAGTACAGCATCTGGCATTGCATGCATTCCATGGTACAGAAGTTGAGGCTATGCAAGCTGAGAGTTGTTACCAATTAGCAAGATCTTTTCACGTGCAGGGTGATTACGATCAAGCTTTTCAATATTATTACCAAGCAACCCAGTTCGCTTCTCCAACATTTGTGCTGCCTTGGTTTGGACTGGGTCAAATGTACATTGCAAGAGGAGACAATGTGAATGCTGCAAATTGTTTTGAAAAGGTTTTGAAACATCAAGCGAATAATTATGAGACGATGAAGATTTTAGGATCATTGTATAGTACAGCAACAGAACCTGAAAAAAGGGAAACAGCCAAAAATCATTTGAAGAAAGTAACTGAACAATTTCCTGACGATGTGGAAGCATGGATCGAATACGCTGGAATCTTGGAACAGACTGATGTGCAGGCTGCCCTTTCTGCCTATGGTACAGCATCTCGTATTCTTAAAGACAAAGTACAAGCCGATGTCCCACCCGAAATTCTTAATAATGTTGGAGCATTGCACTTTCGACTTGGAAATCTCAAAGAAGCTCGCAAATTCTACGAGGCTGCGCTAGACCACTGCAAGCAAGAAAGTATGCAGGATGAAATCTACTACAATGCTATATCTGTGACGATGAATTACAATCTTGCACGACTTTATGAAGCATTATTTGAACTTGAAAAAGCTGACAAGATTTATAAAGATATCCTCAGGGAACATCCAAATTACATTGACTGTCATTTACGACTTGGTTGCATGGCTCGTGACAAAGGCCAGATTTACGATGCATCTGATTGGTTCAAAATGGCACTTTCAATAGATCAGGATAATCCAGATGCTTGGTCTTTGATTGGAAATTTGCATCTTGCTAAACAAGAATGGGGTCCTGGTCAAAAGAAATTCGAGCGAATTCTCAAACAACCAGCCACTACAAATGACACCTATTCATTAGTCGCCCTTGGTAATGTTTGGCTGCAGACATTGCACACACCAAATCGAGACAAGCTCAAGGAAAAGAGGCATCAGGATCGCGCCATCGCAATGTTTAAACAGGTCCTTCGCATTGATCCGAGAAATATTTATGCTGCAAATGGAATTGGTTGTGTTTTGGCTCATAAAGGATATTTTAGGGAAGCACGAGATGTATTTTCACAGGTTCGTGAAGCGACAGCAGAAGTGCCAGATGTTTGGTTGAACTTGGCCCATATTTATGTTGAACAAAAACAACATGTCAGTGCAGTTCAAATGTATGAAAATTGCATCAAGAAATTCTATACATCTTACAACGTTGAGCTGATGCTGTATCTAGCGAGAGCTTATTACAAAGCAGGCAAACACGATGAATGCAAAGCTTTGTTAGTTAAGGCTCGCCATGTTGCACCTCATGATTCATTGCTGATGTTTAATTTGTCAATTGTTCAACAAAGACTTGCAACTGGAGTATTGAGAACGGAAAAGAGTGATTTGAAGACCGTTTTATCGGCTGTGCGTGATTTGGAATTGGCGCAAAGGAATTTCGAATATTTGAGCAGATATGGAGACAGAATGAAATTTGATCTCGCTCAAGCGTTCGCTGAAGGAAGACGATGTGCTGATTTGCTGAGTCAAGCTCAATATCACGTACAAAGGGCAAGAAAGATTGACGAAGAAGAACGAGAAGTAAGGAGGAAACAAGAGGAAGAGAGAGACGCGTTGAAAAAGAAAAGAGATGAAGATTTGAAACAAAAGAAACTCGTAGAGGAAGAAGAACAAAAGAAACAGCTGGAAAAACGTGCGCAGTACATCGAAGCTACGAGAAATCTCTTGAAGTTTTCTTATGCTGCAGAAGCTGCAAAAGTTAAAGCAGGAAAAAAGAAAAGAGATGCAGATTTGGATGGTCTCATTGAGACAAGTGAATCCGAGGCTGAAGCAGGCGGCGAACCGAAACCACCAGGGGAAAAGAAAGAAAAAAAGAAAAGACAGCGCAAAAGGAAAGAAAGAGAAAGAGGAGAACCCAAGCCCAAAAAACAACGAAAACCAAGGGAACCAAAAGCAAAAGGAGCAAGGAAACAGAAGCCGGAACAGCTGTCAGCAAAACAAAAGAAAAAGATCGTTTCAAAACAATTCATTTCTTCTTCTGAAGATAATTCAAGTTCTGATGAAGATGGTTTGAAAATCGATGTTGCCAAGGGACGTGACGTAGGGTCATCAGAAAGTGAAAATGAAGAGAAAAGGCAACAATCCGATATTGAGAGGAGTGACGAGTCAGATAAGCACCAGTCCGATTCAGACAAAGATTCAGATAAAGATTCAGAAAGAGATTCAGATGAGGACTCAGGCATGCAAGATACCAAGAAATTAGCTAATGATCTGAACAGTGACATAGAGAGTGATCTCGAGAAGGAAACCCCAAAGAAGAAGAAACCAAATAGAGTGATTAGTTCATCCGAGTCAGATGAAGAATAA

Transcript

evm.model.ptg000016l.2

Protein

Uniprot

Uniprot term	Description
Q62018	RNA polymerase-associated protein CTR9 homolog OS=Mus musculus OX=10090 GN=Ctr9 PE=1 SV=2
Q6PD62	RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens OX=9606 GN=CTR9 PE=1 SV=1
Q6DEU9	RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis OX=8364 GN=ctr9 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13174	TPR_6	Tetratricopeptide repeat	Repeat	Interproscan
PF07719	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan
PF14559	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR013105	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR031101	Family	RNA polymerase-associated protein Ctr9	Interproscan
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14027	RNA POLYMERASE-ASSOCIATED PROTEIN CTR9	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000993	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15176	CTR9; RNA polymerase-associated protein CTR9	-	Transcription machinery	ko03021	deepkoala