Gene detail

Detailed information of evm.model.ptg000016l.7 in Aurelia coerulea

Genomic Location: chr17:20818218...20853729
NR annotation: KGL77431.1, Low-density lipoprotein receptor-related protein 6, partial [Tinamus guttatus]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000016l.7

ATGAATTGCAAGTATGTTGTGTTGTTCGCTATCATCTGGTTTCCATCATTGGCCTATGGTCATAAACAGCCAAGCATCCTGTACGCGAATAAACTCGACATTCGAATGTTTAATGTTGGAGATCCGAACAATGAAACAACATTGCTAGGAGGATTACAAGGAGTTGTATCGGTTGACTTTGATTGGAGATCACAGACAGGCTTCTTCTCTGAGGTTGCAGATGTCAATGAGATAAGAAGTTTTAGTTTAAAGAAGGGAAAAAGACAAGCGAAAGTGGTTGTTGATGCAAGGACAGGTCGGCCAAGCGTTATAGCTGTTGACTGGGTCACTAAGAAATTGTACTGGACAGACGATTCTAGGACCAGAATTGAATTATGCAATTTTGATGGAACTCAGCGGAAACTTCTTATTGATAGAAACCTGGACCAACCAAGGGCACTGGCCTTGCTGCCACAGAAAGGCCTTTTGTTCTGGAGTGACTGGGGAGGCAGACCAATGATACAGCGAGCAAACATGGATGGTACAGAGCAGAAGACACTGATAACAGAAGATATTGCATGGCCTAATTCATTGACCATAGACATGTACACATATACAGTGTATTGGGCTGATGCAAAGGCAGATTACACTGGGATATATAGCATGGATTATAACGGACAAAACAGGAAAACAGTATTTCGCCATTTGAATCTACGACATCCCTTTTCATTGACAGTTTTTGGGGATACGCTATATTGGACTGATTGGAAAAACCCTCAAATCAATTCATGTACTAAGAGTAATGGCTCTTTTAACACTATCAGAGATAATATACATTCACCAATGGGGCTGATTGCCATATCAAAAGAGAGACAGCCCTTTGTGAACACTGGTTGTAATGTGAATAATGGCAACTGTAGTCACCTATGCTTATTGCGTCCTGGTGGATATTCATGTGCTTGTCCAACAGGAATAAAACTAAAGGAGAATGGAAAGACTTGTGAACCAGCATTGGAGAGGTTCATTGTTGTTGCTCGGAAACCAGACATAAGGATTGTATCCTTGGATGTAGAGCAGTATGCCGATGTTGTATTACCAATACGTAACATCAAAAACGCATTTTCAGTTGACTATGATATTGTGGAGGATTTTATTTACTGGTCTGACAATGACAAAAAATGCATTATGAGAGCACATCCAAATGGATCCAATACGCACGTGATAGCGGACTATGACATCCACAGCCCGGACGGCTTAGCGTTTGACTGGATCGCACGGAATTTATACTGGACGGATGCTGGTGAGCAGGCGGTCGTTTCCGCACGAATTGAAGTTGCACGTGCAAATGGAACATCAAGGAAGATTCTGATTAGTTCTGATTTGGATGAACCAAGAGCAATTGTTGTTGATCCTGCAGAAGGTTACCTTTACTGGTCCGATTGGGGCTCAAAGCCAAAGATAGAACGTGCAGATTTAGATGGTTTGAATAGAAAGGTGCTTGTAAATACAAGTATAGTCTGGCCTAATGGCATAGCAATTGATTACGTTGAACGCAAATTGTACTGGGGAGATGCAAACACCGATGAGATCTCTTGTGTTGATCTTGATGGAACCAACAGACAAGTTGTGTTAGAAAACCTTCCACATGTATTTGGGGTATCAATTCTCGGTGATGATATATACTGGACTGATTGGCAACTGAGGAAACTTTCAAAAGCGAGCAAGCATGATAAAAAGGAAATTCAGATTTTAAAAGACCAACCAGATTTGATGGGGATAAAAGCAGCCGAACGCAGTTTGGATTACGGAAGCAACCCATGTCAGAAGACAACTAATCAATGTAGTCATCTATGCTTCTTTACTCAATCCAAAGCTAAATGTTCATGCCCATTAGGAATGGAATTGGACAAAAATGAACAAAATTGCATTGTACCAGTTGGCTTCCTGCTGATCATGCAGCGTGATGACATCAGACGAATAACGTTAGACATTTACAAACGGGACATCAAAATCCCATTGGCTGACGTGAAAGAGGCTAATGCCCTCGATTTCGATTTGAGTGAAGAAAGGATCTACTGGTCAGATATTGGCTCCTACAAAGACATCAAAAGTGCCCATATGAATGGAACTGGACTGAAAACAGTCATAAGACATGGCCTTGAGATGCCCGTGTCTATCTCGGTCGATTGGATTGCCAAGAATATATACTGGAGTGACATCACTGCACATAGAATTGAAGTATCAAGGCTGGATGGTCGAAATAGGAAAGTGCTTTTGTGGGAAAATATTGAAAATCCGCAGGCACTTGCTGTTAACCCCCATAATGGTCGCATTTATTGGTGTTCTGCTTTCAATGGTGGACATCGAATTGAGGAAGCCAGATTGGACGGAAAGCATCGTAGAACGCTTTTGGACGATTTAGGGGCTGTGACGTCACTCACTTTGGATTACGAAAACAAATGGATTTATTTTGCTGATAAACTTGTTCATACGATTGAGAGAGTTGATTTTGGCGGGAAAAACAGAAAAATGTTATTGTCTGATGTGGCGTATCCTCAAGCACTTACGTTATACAGCAATTCCATTTATTTTGGAGACTGGAAAACGAGATCGGTTGGACGTGCAGACAAAAATACAGGCCAAAATAGAACACGAATTATGGACAACCTCGAGTATGTTATGGATCTGCTTACTTATCATAAAAGTCGTCAAACAGGTTCAAATGCTTGTGCAGTTCGTCGTGGATATTGCAGCCATCTTTGTTTTGCTTTTGATGAAGATAATTATACTTGTGGATGTCCAACGCATTATTCATTGAGAAATGACAGCAGATCGTGCGCAGCACCGACAACATTCTTACTGTTCAGTCAGAAAAACAACGTTCGTCGAGTGACATTCAAAACCAAAGATAATCCGGATTTAGTGCTTCCAATCCCGAGTTATGATGACGTAAGAAAGATCGATTATGATTTCAGAACCGGATTGATTTACTGGATTGAATCGGACAGCAATGCAGCGATCAAATCTGCAATGGAAGATGGATCTAACGATCGTCAGATTGTCGGTGGATTAAGGAAAGATGTGAATCCATTTGATCTAGCGGTAGATTCATATGCAGGCAGTTTGTATTGGAGTGACAGTGTTGATGACACCATCAAGTTTATTCACTTCAAAGGGGATAATGTAGCCTCGATCATATTTGCGAAAAAGAAGGGATATAAGCCGAGAAATCTTGTTGTGTCTGCTGAAGAAGGATATTTGTTTTGGACAAACATGGCAGAGAAGCCAACAATCGAGAAATCAACAATGGATGGAACAACTCATTTCACATTGGTACAGTTTAAAGATGGCCGCCCTGGAGATCTGGCAATTGACCACCTTAACAGCAGGCTATATTGGATTGACAATGTCAAAAGAAAAATCGAATCTGTAAATTTCTCAGGCCAACACCGTACGTCTGTTGTATTGGACAGTTTACTAAAACCGCGTGCATTGACCATTCACGGAGATTTTGTGTATTGGGTTGATAGTGATACAGAAATGATGCATCGATCGAATGTGAAGGAGGGCAGCACAGCGACGGAAGTTCATGGGAAATTTCGAAGTTTAAGCGATATTAAAGCCGTTAATAGAAAGAGAAGAAGTGTGAGCCACCCTTGCGCAGATAACAATGGTCAATGCAGCCATATTTGTTTCGTGTCCCGGAAAGGAAGCCATTCAACGGAGATTCTGACTTATGAGAAGAAATGTGCATGTCCGGTCGGGTATGTCCTCGATCCGGTCACCAAGCTCACTTGTACAAATGCAAGTCCATGCAAGAAAGATGAATTTCAATGTGTCTCAGATGGTGCTTGTCTGACGCTGTCACAGAAATGTAATAAACACGATGATTGTGTTGATGGGTCTGATGAAAGCCACGAAACATGTGGCAAGCCACATCCATGTGATTTGTTGATTCATTTTGATTGTGAGAATAAATGCATTGACAAAGAGAAAGAATGTGACGGAATTAAAGATTGCCCTGATGGTAAAGATGAAGTCGGATGCATTTGTCAAAGGTCAACTCATTTCATGTGCCCTGATAAGAAATGCATTGATGCTCACAGGAAATGTGATGGTATTGATGACTGTGGAGATGGAAGCGACGAACAAATTGCCATCTGCCCAGGCAATGCTACTAGCATCACAGCAACAAGAGTCCCCAAACCAAGCCACACCAAAGTCTTAGCTGGCATTGCTGCTGGAGTTATCCTTAGCGTTTTAATGCTCGTTTTTGGATTATTGATGTGGTGGAAATTACAAAGATCAAAACGAGGCGTGCGACAGAATACTGACGCTGGTCTCATTACCGTGCCGAGGATACTAAAAAGTGCATCAGAATATAGTATGGATGACATAGAAGGAAGCAAGAGTTCCGTGTCCACATACGTTTCAGATCTTCATATTTCGCAAAGGAGTGAGCTTTACAATAGAAATCTTACTGGAACATCCAATGTCACGTTAACATCAAATTACACACCGGTGCCTGCCAATCCACCACCCTCACTTATGACTGAAAGGGTTTTATCCACTATTGGTGAAAACAAAGCGGAGCCATCACGAGCCCCAGAGCCAACAAGAGCTCCAGCCCCTTCTATGGCAACGTATGTGTCTTGTAGCCATTGCTCAATGAGCTCGTTAGGGACAATGCAAAATCCCGATTATAACTATGTAGAAAACGACCCGCCACCCCCAACCCCAAATTATACGGATGCGGGCAAAGACTCAGATTATTTGTACTTTTCAGGGTTGGAATCAGATCGGATACGATCACACAGACATTCTCATAGGTCGCATCGGAGTCGGTCACGACGGCATCATCGTCGGATGCCAAGAGTTGCGTCACCTGTCTCAACAGATCTAACAGAGGGGACTGAACTATTACCAAGGCCACAGATGCCAATGAGACAAAATAGTCTGGCCTCAGATTTTAATGAATTATATGTTGATACAGACCATGACCCATACGCTCCACCTCCAACTCCTTACACCATGTATTTGTCGGAGGGCACAGCCATGTCTGATGATGACACACGACCACCTTCACCGGCTGACACTGAACGGAGTATGCAACAGTATCCTCCTCCACCATCACCGACCAGTCAGATGTAA

Transcript

evm.model.ptg000016l.7

Protein

Uniprot

Uniprot term	Description
O88572	Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1
O75581	Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2
Q91VN0	Low-density lipoprotein receptor-related protein 5 OS=Mus musculus OX=10090 GN=Lrp5 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR051221	Family	Low-density lipoprotein receptor-related	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22722	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006898	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0042562	Molecular Function	hormone binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03068	LRP5_6; low density lipoprotein receptor-related protein 5/6	-	Membrane trafficking	ko04131	deepkoala