Gene detail

Detailed information of evm.model.ptg000024l.80 in Aurelia coerulea

Genomic Location: chr16:20086825...20089311
NR annotation: XP_027046792.1, mediator of RNA polymerase II transcription subunit 16-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000024l.80

ATGAGGAAACTTTTCAAAGTTGAATGGAACACTGAAGAGTCAGGTTTGCAGTTGAAAGCTCAGATCGGTAGGCCAGTTTCATCATGGTCAACAAGAAACCTCGTGGCGTTCACAACAGGCCATCTTGAATCAAAGCAAGAGAAATCATGGCTGTCCACGATTATGGTACATATCATGAACCCTGAATACCCCTGGGAAGTTTATCATATTGAGACAGGATTGAAGGAACCAGTGGAACATCTCATGTGGGACAGAAGTGGCACAAGACTTCTTGTAATAGATGGTAGTGGCGCTTGCAGGGTTTTTGCAATGCGAAAGTACATGGTGAATAACTGGGAGTGCACACATGAAGCAGATGTTGGCAATAAAGTAGTCTGTGCTGCATGGTTAGATGCTGGGGTAAAGAATGTTTTTGATGCAAAAGCTGGTCCTTTCAACCTACTGGAGAAGTTCCCAAAGAGATTTGGAAAGTCACCACTTATTGACATTTCCGGGCTAAGCAGAGAGGGCTTCATCTTGGTCACTGAGACTGGTTTTGCTCATTGCGGTGTGCTGGAGAGTGGAGAGAAAGAAGTTCAACTTCAAAAGACAAAGCTATTTGCAAGTCGTTGCAGAGTTCTTCGTGGTGATATCTGTTTCAAAGATGACGGCAAAGTTCAGATTGTCTTAGCCACAAATCAGAGAGTTGTGGAGTACTTTGTTTTGGTGCTAAAAATTGTGACTTCAAAAGTTGAAATCCTAGTTGAAATATCACCATGTATTGTTCCTCATAAGATGTCAGATGAGGAATACATGACATACCAGATTTCTTGTGTTAGATTCAGCAATGAGGCAAACATGGAGAAGATCATTATTTGCACTGAAACTGCTGGTGTCACGACCTTGAAGCATTTTGAATCAAAAGTAGAGAAAGCTAGTCTGCAGCCTGTTTTACAGAGAATGACACAAAACCCAAAAGTGTTTCCAGTGAAAGAATGGAGTTCCTCTAAGTCAGTCACTGTGCAGGGAAATGTTTCTTGTTTAGCGCTTTCAAGATTATCTTCAGTGGCTCAACCAGTGGGGGGAGATCTTCCTATCTACCCTGCCATGATAATTGCTACAGATGAAGGAACACTCCAGAAGCTGCCTTTAAATTTGTCTGGACCTAACAAGACAACAGAATATTTTCAAGAAGAATCAATTCTATGCCTTACATGTTCACCAAGTGATACCTGCATACTAGCTGTCACAGACAAAGGGAACATTGTTGTGTACCAAGTTTCATCATTTGAAAACACTACTGAAACTGTAGCGATCAAGACTTGTGTCAACCTGTTTGAATATTGTCTTGTGACGGGTCATTCATCTTGGGATGTCACAATTGCCTGTGCCGCATTTGGGGATAGGTTCACAGAGCAGTGTAACCAGTTCCTGAGAAGCAATTTAAAGAATCAACCAGCAATGACACAAGAACGTATATCAAGAAAATATGCACAAATGCAAGCTGATATTTTCAAGAGCTTAGATGGAGTTTATTTTGGCTCTCTTGAAAGCTTTAATGTGTTGATGCTGAAGTCAATCTACACATACCTTCATGCAGTGGTGATGGTGAAGTCCTCAGACAGAGAAGCTCAAATTTTGACAAAGATAAAAATGATTTGTAATGGCCAGGTGGAGATTGATCTTCCAAAGATCATGCAACTTCTTGAGATCAATAATTATATGGTCAATTCTTCGTTGGTTGCATCTGTGCAGAATCTAATCCAATGGGTAGCATCTTACTCTATTCACATCTGCAAGCTTGTCCTGTCCTCAGACCGTGGAACAACCACCAAGCAGCCATTGTCTGTGTTGAACATCCAAGGCCTAAAGACATTGCAAGAGATTATTACTCTTATCTATGTTTGGGGACAAAAACTTCCTGGATGGCAGCCCCATTTTCTCGAGTTGGCAACCCCATTGGACATTTTGAATCAGGTTTTTGAACTAGTTTCGAAATTATGCATGAAATTTGCGCAAGGTGATTACAGCAAGGATAACATAAATGATGAAGAAATTCCCATGAGATCGCACCCTATGATGTACAAGAGTCTACCATTGTATGACCCAAAATGTGGAATTATCAGCCAATGCCGATTCCAAACAAAGGATTTTGACATTTATGAGTTCACTTCAGAGGAAGAAACAATCTCAAGTGCTAGAAATTATTCTTTCCCTCATCCCCTGACAGAGCAAGTTGAAATGTATAGCAACTCCAACGGAGAGTTTTTCTTTGATGGGATGAACCTGATGACAAGTTCCCTGATGAAAGATGAAACTTTGAAACAATGCCTGCAGTGCTCATGTGTGACATTAAGCATCGTCAACCCAGGCCGTGTTTTGCAGAGTTCCTTGAAAGATCAATGGAGTGATACGTGTTTTTGTGGTGGTTTCTGGAGAGCTCTAGACATCGTTAAAGAAAGTAGTGACCATATCAAAAGCGAGAGTGTCTCACCAGACAAAAAATAG

Transcript

evm.model.ptg000024l.80

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20718	Med16_bridge	Mediator complex subunit 16, central helical bridge	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR048338	Family	Mediator complex, subunit Med16	Interproscan
IPR048616	Domain	Mediator of RNA polymerase II transcription subunit 16 , central helical bridge	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13224	THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15159	MED16; mediator of RNA polymerase II transcription subunit 16	-	Transcription machinery	ko03021	deepkoala