Gene detail

Detailed information of evm.model.ptg000024l.834 in Aurelia coerulea

Genomic Location: chr16:626809...646401
NR annotation: XP_032237086.2, vacuolar protein sorting-associated protein 11 homolog isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000024l.834

ATGGCGTTCCCACTGTGGAGAAAATTCAATTTCTTTGAGAGGGAAGTGCTGAAAGTGAAAGATGGAGCAACTGAACAACCATTTGACAAGCTGAAGGGACTTGAAATTACAGTTACTGCCAGTGGAAGAGGAAGCATTCTCATTGGAGACAATGACGGAAATGTGCATATTCTTGACAGAGAGCAAAAATTCTCTTCATTCAAAGCTTATGAATTCAGCATCAGTTTATTGTTTCAAATGAAACAACACAACATTCTGGTGTCTGTTGGGGAAGATGAAAAAGGTGCCAACAATGTGATTAAAGTTTGGAACTTCGACAAGATGGACAAGACTGGAACACCATTACGCTGCAGAACATACAGAGCAATGACTGGCAGCAAGCTTGTTTCAGTGACAGTTATCAGTGTTCATGAAAATTTGAGTCAGATGGCAATTGGGTTTGAAGACGGAACAGTAATCATTGTACGTGGAGATGTCACCAGAGAAAGACAAAGTAGGCAAAGATTAGTACACCAAGACAAATATCCTATCACCGGCCTAGCATACAAACAAATTGGCAGCAATATTACCTTATTTGTTACGACAAACGAAACAGTCACATCGTACAATGTTTCTGCAAAAGACAGAAAGGAGCTACTCGATGAATTTGGCTGTGATTTTAAATGCTCTGCTATCAGTGATGTGTCTCAAGAAAATCAATTTGTTATCGCAAGATCTGATGCATTGTATTTTTACCAGCCAGAGGGAAGAGGTCCCTGCTTGGCGTTTGAAGGTGACAAAAAGATGGTTTATTGGTTCCGTGGTTATTTGGTTGTTGTACGAAAAGAAACAAAACAATTACCAAGGGCTGGCATGGCAATGAATACATTGACTGTTTACGATATTCAGAATAAGTTCATAGCTTTCACTGCGCCGTTTCAAGAAATAATAGATGTATTAGGCGAATGGGGATCATTGCATGTCATTACGAGAGAGGGAAAGATTTTTCAACTGGAGGAGAAGGACACGCAGACAAAGCTAGAAACGCTCTTCAAAAAGAATATGTATGATATGGCCATCAATCTTGCAAAAAGTCAGCACTACTCAGATGGCCTGTTTGAGATCTTCAGACAATATGGTGATCATTTATATAGCAAAGGCGATCATGACGGTGCAATTCAGCAATACATTCGAACTATTGGACACTTAGAGGCGTCATATGTCATAAGAAAGTTTCTGGATGCCCAAAGAATCCACAATCTCACAGACTATCTGCAGGCTTTGCATGAGAAAGGACTCGCCAACACAGACCACACAACGTTGCTTCTCAATTGTTATACAAAGCTGAAAGCTGTTGACAAGCTCAATATGTTTATCCAGACGGATAAAGAACTCAATTTTGAAGTTGAAACAGCAATCAAGGTTTGCAGACAAGCTGGCTACTTCAAACATGCACTTGATCTCGCGGAGAAATTCCAACAACATGAATGGTATTTAAAGATTCAATTAGAAGATGTGAAAGATTATAAGAAAGCTTTGAAGTACATTTCAAGATTGCCTTTTGTCGAGGCTGAGGCAAACATGAAGGCATACGGTAAAACACTGGTTAACGAGGAGCCAGATGAAACGACAGAAATGCTAAAGAAATTGTGTTCTGATTATAAACCGGTTGTTGATAAACCAGCTGAACGGCACGTTCAGGATAATGGTAATATTGATACTACAAGTGGTCCAGCAAGTTTTGGTATAATGGGAATGGCACACAAGACAGCTTCGCTCATGATAAGTCCAGCTAGCGTTGAGCCAGTTCTTCGTGCACGTCCAGATGAATTCATACATATTTTCGTGCATCAGAAACAAAAATTGGTCGAATTTCTTGAGCATATGGTTAAGATACGAAACGATTGCTCCAATGTTGTCTACAACACTCTAATTGAACTTTACTTACATTATGCTAGCAGAGCTGCTGAGACCAAAGATTACGTTGTTGAAGCTGAACAAGAAAACAAATGCTTAAACCTTTTCACAAACACGGAGTCAAAATACGACTTGGATCATGCATTGGTCTTGGCTCAGATGCATAACTTCAAACGAGGCATTCTGTTTCTCTACGAGAAAGCAAAATTATTTCAACAAATCTTGAGATATCATATGGAACATAATGACCACGACGCTATCATCGAAGACTGCAAAAAATATGGCCGACAGGATACAAGTCTTTGGAGCCAAGCTTTGTCATATTTTGCAAGGAAAGAAGAAGATTGTCGAAGGCACATCATGGAAGTTCTTGAACATATCGATAAATACAATTTGCTATCCCCCTTACTGGTAGTGCAGACACTTGCACATAACTCAACAGCAACTTTAGCAGTTGTCAAGGATTATATCGTCAGAAGACTCCAGCATGAAAATGAGCAGATTGCAAAGGACGAAAGAATGATTCGACAATATCAAGATGACACAGAAAAGATGCGTAATCAAATAGAAGAATTGAAAACGTGTGCAAAGATCTTCCAGAGCTCAAAATGTATGATTTGTTCTCGAATGTTAGAGTTACCTGCTGTTCATTTCCTTTGTGGAGATTCCTTTCATCAAGGATGCTTCGAAAGCTATTCAGAAAATGAAAATGAATGTCCTTGCTGTGTATCAGAAAACAGAAAAGTTTTGGACATCATCAAGGCACAAGAACACAATAAAGATTTACATGAACAGTTTCATCACCAGCTGGAAAGATCAGCTGATGGATTCTCAGTCGTTGCTGATTATTTTGGAAGAGGAGTATTCAATAAGGTTACAGTTCTCACAGATCCAGGCACGCAACAACCGATGGTGCCTGTCGACCCTTCAATTCAAAGAGACAAACTGCTTCGCTGA

Transcript

evm.model.ptg000024l.834

Protein

Uniprot

Uniprot term	Description
Q9H270	Vacuolar protein sorting-associated protein 11 homolog OS=Homo sapiens OX=9606 GN=VPS11 PE=1 SV=1
Q91W86	Vacuolar protein sorting-associated protein 11 homolog OS=Mus musculus OX=10090 GN=Vps11 PE=1 SV=3
Q54YP4	Vacuolar protein sorting-associated protein 11 homolog OS=Dictyostelium discoideum OX=44689 GN=vps11 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12451	VPS11_C	Vacuolar protein sorting protein 11 C terminal	Family	Interproscan
PF00637	Clathrin	Region in Clathrin and VPS	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024763	Domain	Vacuolar protein sorting protein 11, C-terminal	Interproscan
IPR000547	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan
IPR016528	Family	Vacuolar protein sorting-associated protein 11	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23323	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005768	Cellular Component	endosome	Interproscan
GO:0006904	Biological Process	vesicle docking involved in exocytosis	Interproscan
GO:0007032	Biological Process	endosome organization	Interproscan
GO:0007033	Biological Process	vacuole organization	Interproscan
GO:0030674	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0030897	Cellular Component	HOPS complex	Interproscan
GO:0048284	Biological Process	organelle fusion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20179	VPS11, PEP5; vacuolar protein sorting-associated protein 11	-	Membrane trafficking	ko04131	deepkoala