Gene detail

Detailed information of evm.model.ptg000027l.213 in Aurelia coerulea

Genomic Location: chr9:3439965...3481240
NR annotation: XP_047127971.1, PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000027l.213

ATGGCGGCAGTTTCAGTGGGTGATAATGGTGGTGATCTTGGCCAAGAATTTCACGAGACAAGAACATTCATTAATGATCATGTCAATAATTATATGACAACAGCAACTGTCTTTGATCCTCAAGAAGAATTGCTTTGGGTGGGAACCGAATCGGGCCATGTCACATCATATTGTGGATCTCAGCTTCATCGATACACGGCATTTCAAGCTCATCTCACTGACATCAAACAGATAATACCAGATGCATTTGGAGTCCTCTCGTTAACCTCAAATCAAGTGAGATATACAACAAGACAAGGACTCAAAATATTTCTTGCTGTTGAAGAGAACATGCAAGACATGCAATGCATGGTTCATTATGACAGTAGCTATGTCACAGTTGCTGGTCATCAAGATCATTTTTATGAAATTGATATGACAGCTGGTGAAGTTTACCCAAGAGAGATTGAAATTGATCCTGGAGTTGTGAAGATGAAGCATTCTGACCATTTTCTTTGCTGTGGTGACAGTCAAGGAAAGGTCACTTTGAGAGACCCAGACACCCTTGAGTCTATGCATGTCTTAGAGGCACACGGTGGAACATTATCTGATTTTGACATTCATGATAATACGTTGGTCACATGTGGATTCTCTACCAGATATGGCCACTTGAGCGTGGATAGATTCCTTATGGTTTACGATCTAAGGACGATGCGAGCATTCCCCCCACTTCAGGTGCCGGTTGATCCCTTCTTCGTCCATTTTTTACCAACATACACAACACGCTGTGTCGTAGTCTCCCAGGCTGGTCAGTTTCTTCTTTGTCAACCTGAAAGTCTTGTGTATGACCCATTGATATACCAAGCCAGCACTCATGGTGCCATGGTGATGGACTTTGATATATCGACGACATATCAAGCATTGACATTTGGAGATTCTGCGGGCTACGTACATCTTTGGTCAGACAGAAGTGAGGAAGAGCTCATGTTCAACCCATTCTCACAGCCAACTTTATTCGCAGACGAAGTACAACCACATCCTCCAATATCATTTGATGATTATTCCATTCCGCTCTCTTCCATACCCCTTCCTGAATGCAAGGAAGGGCTCCTTTCTGATTGGCCGGAGCATCTGACACGCAGAGTTGACAGGCGGACTCCAGAGATTGATCCTGACATACTGAAAAACATGACAATTCGGCAATTGGTTGGTTATGCTCCTAATCCGAAGAAAAAACTCAGAAATCAGGTGGCATACAAGCTAGATAACACAAACTGGAATGGAGACACCGAGGCAGAACCACCAGAATCACCACTTAAACGCGATGCAACGTCTTCGCTCATTCCAAAGATGTATCGTAAAGTTGACATCAAGTACACAAAATATGGTGTCGACAATTTTGATTTCAAGCATTACAATCACACGAGATTCGCCGGCTTGGAGATTCATATTCCAAATGCATATTGCAATGCAATGCTTCAGGTGCTGTATTTCTTGGAGCCTCTTCGTGTTACAATGCAAAATCATATTTGCCAAAAAGAATTCTGCCTGGCTTGTGAACTTGGATTTTTATTTCGAATGCTCGATGTGGCTGATGACCAAACATGCCAGGCAACGAATTTCTTGAGGGCATTTCGAACACTTCGTGAGGCTTCGGCCCTTGGGTTAATCTTATCTGAAGTGGATGAATCGACGAGAAATCAAAGTTTAGCCAAGGTTATTCAGAATTGGCATCGATTCGTTTTGCAGCAAATCCATCAGGACACCATGTCAGTGCCAAAGAAGCCATCAAATACAGAGGAATCAGAACCAACTATCGATGAAACTGAGACTTCTGATGTGAAAAATATCTTTGGATCTCAGCTAGAAATTACCAGCAAATGCAAATGTGGACAAGGACAAACGAGAGAATCAACTGTTTTCTTATTCGACCTTCAATTTCCTGAGAGTGCTGTTACTGATGACAACGATTGGTCATTTTTATCAACCATCAAAAGCAGCATTTCAAGACAACAAGTTGTGCCAGCGTGGTGTGAAGAGTGCAAGAAATATCAATCGACCATGCAGACAAGAAAGCTCAAGTCCCTTCCTGACATATTAAACATCAACTGTCGCTTGGAACAGCCTCGAGAATATGAAATATGGCGAAAACATGTTCGGGCACATCAATCGAGCCATCATGGTAAGCCGCACAAATTGGGCGTTTCTCCTCCAAAAGCATGTCGTTATGGAAAATTCTGCAATCGACCAGGTTGTAGATTTTCACACGGAAGAGAAGGGGAATACCTTTCAAGCTCTCCATCACTTACGGATAGCGATGGTCATTTAAAATATGTCCTGCCGTTGAGCTTGAGGATCAGAATTGATCCAGAAACTGAGGAACTGTCAGTTATAGAACATGATTCAAAGGGAGATACATCTGACATAGATGAACACACAGGGACATACGCACTATCATCAATAATTTCAAATATTCAAGATATTCATGAAGGAAATACATTGGTGGCTACTATACATGTCAGCGAAAGCTATCATGAGAGAAAAGAGGGTGCACCCAGGACAGGCTGGTATGTTTTCAATGATTTTGCAATAACACCAATTTCAGAGCTGGAAGTGCTTGACTTCAATGCTGAATGGAAAATACCTTGTTGTCTTGCCTACACACGGATTGATATTAATGGACGCCATGAGTTAACAATCGAACAAAAGATCGAGTCAAAAATACTAATATCAGACGCATCCCTGGCTCAAAGACAAGCCCGTTTTTCGAGACAGTTTACCCCCCTGAATTCCTCTGAAATCCCGTTAAATGAAGGAGACTTTGTTGGAATTGATGCTGAATTTGTTACGCTGAATCAGGAAGAATCAGAGATGCGTAGTGATGGCACGTTGTCAACTGTCAAACCAAGTCAAATGTGCGCCGCTCGCATTACGGTAGTGCGGGGGTGGGGTACACTTATGGGAGTTCCATTCATTGATGACTACATATCGACTTCCGAGCAGGTAGTGGACTATTTAACACGATTCTCTGGGATCAAACCTGGTGACCTTGATGCTAACATGTCATCAAAGCATTTAACAACACTCAAGACGACTTATCAAAAGTTGCTGCATCTGATTGATCGCAAAATCATTTTCATTGGTCATGGATTGAAGAAAGATTTCAGGGTCATCAATTTAGTGGTACCTCGAGATCAGATCATCGATACAGCTGAACTTTTCCGGGTTCCTAATCAAAGATATGTCTCGTTGAAGTTCCTCGCATGGCATTTCCTGAACATAAAGATTCAATCGGAAAGCCATGACAGTACCGAGGATGCATACACTGCAGTGAAATTGTTTTTAAAATACCAGGAGATTATTGACAATGCTGGGGAGGATCAATTTGACAGGGAACTCGAAATATTGTATGACACAGGCAGACAACTAAATTGGCAAGTGCCAGACTGA

Transcript

evm.model.ptg000027l.213

Protein

Uniprot

Gene family

Uniprot term	Description
Q5F450	PAN2-PAN3 deadenylation complex catalytic subunit PAN2 OS=Gallus gallus OX=9031 GN=PAN2 PE=2 SV=1
Q8BGF7	PAN2-PAN3 deadenylation complex catalytic subunit Pan2 OS=Mus musculus OX=10090 GN=Pan2 PE=1 SV=1
Q504Q3	PAN2-PAN3 deadenylation complex catalytic subunit PAN2 OS=Homo sapiens OX=9606 GN=PAN2 PE=1 SV=3

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00929	RNase_T	Exonuclease	Family	Interproscan
PF20770	PAN2_N	PAN2 N-terminal	Repeat	Interproscan
PF13423	UCH_1	Ubiquitin carboxyl-terminal hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR013520	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050785	Family	PAN2-PAN3 complex catalytic subunit	Interproscan
IPR048841	Domain	PAN2-PAN3 deadenylation complex catalytic subunit PAN2, N-terminal	Interproscan
IPR028881	Domain	PAN2, UCH domain	Interproscan
IPR030843	Family	PAN2-PAN3 deadenylation complex catalytic subunit PAN2	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15728	DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000289	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0004535	Molecular Function	poly(A)-specific ribonuclease activity	Interproscan
GO:0031251	Cellular Component	PAN complex	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12571	PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2	EC:3.1.13.4	Messenger RNA biogenesis	ko03019	deepkoala