Gene detail

Detailed information of evm.model.ptg000031l.320 in Aurelia coerulea

Genomic Location: chr11:4807757...4861011
NR annotation: XP_041356623.1, BTB/POZ domain-containing protein 19-like [Gigantopelta aegis]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000031l.320

ATGGCTGCACTTGATGAAAAGAGCACGGATGATCAACGATTAAGAAATAATATAAGTAAGGGAGATGCCTTCGATTTTTACCATGACATGAGCTGGCTTGTAAATAGTGAAAAGTTCAGTGACATCCAATTTGTTGTTGGTGAAGATGGTACAATGATGTATGGTCACAAATGTATTCTATCCTCCAGGTGCAAATCCTTCGAAATGCTGTTCGAAAATCGTGACTGTAGCAAACCCTTTGTGATCGATGACATTCAGCCAGAGCATTTCCACGCATTGCTAGAATTCATGTACACTAACTGTTGCAGCAAACTTTCTCAGGAAAATGTTTTCGATATACTAGCTGCTGCAAATGAGAAAGGCTTAGATAAACTGGTCAAGATCTGTGAAGATTTCTTGTTGAAAAATGTAAATATGACAACAGTCTGTGAATACATGGAGGTAGCAGTCACATTTGGTCTTGACAATCTGAAAGACAAATTAATGGTTTATTTTGATGGGCACACTGAAGACATTTTCAAATCAGCTTCATTTAAAGAGATGTCAGCTGCCTCTCTTGAACAGATCCTCCAAAGCAACAAGTTAAGAATGGATGAATATGACATTTATGAAGTTGTCCGTGAATGGGCGACCATCAACTCGCTTGTATTAGAGCAACGAGTAAGCGAGGTGGCAAAGGATGTCGTGAAGCAGCTTCGTTTACCATTGATGAACTCAACAGAGTTAGCTAAAATTGAGAGCATGAACGAGGATAATCTCATTCCAGTAAGAAGCAACATAAACCTTGTGAAAGACTATTATGTTATGAAATTAAATGCTCCAAGACCAACAAATTTTTCAGAATTATCAGATGCATATTTATCAAGACATGCTCTATCACAAGGTGAGGATGAAACCGCAGTAGGGACTGTCACTGGTGCAGGAAGTGAATATGGCAAAGAGTGGAAAGAAGAAATGAAAAAGAAGCGAAGAGGACATGTCAAGAAAGAAGTCAACAAAGAAGATATGCTATATTCCTTGAAATTGTGTGGCAAGAAAGACAAGAGATTCGAAGGGAAGAAAGAGGGGACAATATTAGAGAATTCAGCATATTACATCCTTACACAATGCCCAGATGGTGTGTTTGAGGCTGTCCCAATACAGGCATGGTATACATTTCAACCAAAAATCACCTACCAAACATTGTCATTAGACGATGCAGAAAGAGAGTTATCGAAAAGAGATAAAACTATAAACTATCATAATTTGATGATGCAAAAGAGGCTGCAGGCAAGCGAAGAGAACAATGAAGAGCATCGTGTTGGAGATAAAGTTAGCAGCACTTTCCGAGACGATTTGGTGATTCATGATGATGATGAAGATAGTGATGCTGGGAAGTCTTCAGAGGAAAATGAGGACGATGAGAAAAAAGGTAAAGAGAAGAAATCAACCAAGGCAAAAAAGAAAGATACGTACACCAGTAAAAAGAAGAAAAAGGACGATGAAGATGATTTCGGTGATTTGGATTCCGATGAAGAAGAAGAGCTTGATAATAGGGAATCAAAAGAATGTGATTACATGTCGGAATCATCATCAAATGATGAAGCAGAGTTATTGGAAGATGAACCAGAACCAGAAACAAACAAGAAAACGAAAGCAAAGGATGAGTTAAATGAATTCACGCTGAGTGACTCGGAAGAGGAGGAAGAAACAGAAGATGGAGGCCTAACATCTGCAGGAAAGGAATTAAAAGAAATTTTGAAGAGAGAAGCTGGAGATGAAGAAAGCAGTTTGGATGAAGATGATGATGATATCGATGATGATGAAAAATATTCAAAATCTGCTCTTTTTATGCAAGGTAATGACGGCAAGAAAAAGAAGTCTGGTCGATCTGGAAGTGTTTCAGGATCGAGTTCAAGCAGTCGTTCTGCAACGCCAACTCCACAAGGTGATGCATCACAGACAACAACTCCACCGTTGGGGAAGAAAGCTAAAGATGGCAAGACTGAAGCAGCTAACAGGCTGACACCAACACCACAAGCAAACAGGAGAGATATTGAATCTCCGTCATCTCGCAAACGCCCAAACAGTCGAGAGCCAGGTGATGGTACTCCTCCAAGCAAAAAAGAAAAGCTACAAGGTGCTGCATCAAGTTCCAAGAAACGAAAGGAGGCACAAGATTCAAGCAAGAAGCAGAAATCATTGCAGGTTCCATCGGAAGCTTCTTTATCCAATAGCAAAGAGCCTTTAGCAATAACAGAGACAACAATTCGCAGATATCTTGCTCATAAACCAATGACGACGACAGACTTGGTGAAGAAATTCAAAACAAAGAAAACAGGCCTAACTAAAGAACAAACTGTTAGCAGGGCAGAAAAGCTGGGGAAAATGGCCAACTCAACACCAAGAATCAAATTGAATCCGAACACAAGGAAATTGTTTGAAATAAGTAAGCATGTTCTACAGGATGAGTTTGATGATATGAAATTCTTATGCAATAATCACATAGCTGCTGGAGAATTGGAAAAGATTGACAAAGTTTTGAAGTTGTTTCAGAAAATTGGGGAAATAGATGACACTGGTGATGGTGGAATAGCTTTTATTTCTGAATTGCTTCGAGCAATTGGAAGAAATGACCTGTGCAACAAGTTAAATGGTGTTGAAGAAACAGGAGCTTCTGCTCCAAAGTTGAAACTAAAGGTAACAACACAGATACCCCAACAAATATTGCTGCTAGTGGAGGAAATGGTAGCTGCTGATTGGAGACGTTTAGGCAGACGCTTGAGTTTAGCTGAACATGTAATTGACCAAATTGATGCTGACAAAAGAAATGTAAAAGAAAAATGTGCAGCAATGTTGAAGGAATACATGAAAAGTGAAGGGTCCAATGCTAATGTTGCAAATTTGAAGAAAGCTCTTGACAAAATGCCAAGACGAGACGTTGTTTGTGAAATTCAAAAATTGGAAGAACCAACTGCTGATGGATGTACTTTAAAGAACCCAGTTCAAGTGTCAGGAGAAGACGACAAGAAAACATCTGCTCATGTTCAAGATGCAATTGATGGATCCAAGCTAACGACAACAACAACAAAGACGAAGATGGAACCCCCGATTAAGCCACCTAAAGCTGCCTCAAAATTCAACATCCAAATCCACGGTGGCAACGTCATGGTTGGCGATGGTGGTAGGATGACTGTCAATTCCACGTCAAAAACGACTTTTGATCCAGAAGTTGTGAAGAAATTTTATGAAATGAATCCATATGGTGCAGGTGCGAACAGTACAGTGTTTGGTAAAGGAGGTGTAACAGTGATTGGTTCTGATGGTAAAGTGCATACCGAGAAGAGATAA

Transcript

evm.model.ptg000031l.320

Protein

Uniprot

Gene family

Uniprot term	Description
P35269	General transcription factor IIF subunit 1 OS=Homo sapiens OX=9606 GN=GTF2F1 PE=1 SV=2
Q3THK3	General transcription factor IIF subunit 1 OS=Mus musculus OX=10090 GN=Gtf2f1 PE=1 SV=2
Q6AY96	General transcription factor IIF subunit 1 OS=Rattus norvegicus OX=10116 GN=Gtf2f1 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	ZBTB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01335	DED	Death effector domain	Domain	Interproscan
PF00651	BTB	BTB/POZ domain	Domain	Interproscan
PF07707	BACK	BTB And C-terminal Kelch	Domain	Interproscan
PF05793	TFIIF_alpha	Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	Family	Interproscan
PF00531	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000488	Domain	Death domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR001875	Domain	Death effector domain	Interproscan
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR011039	Homologous_superfamily	Transcription Factor IIF, Rap30/Rap74, interaction	Interproscan
IPR011705	Domain	BTB/Kelch-associated	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR042846	Family	BTB/POZ domain-containing protein 19	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR008851	Family	Transcription initiation factor IIF, alpha subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46965	BTB/POZ DOMAIN-CONTAINING PROTEIN 19	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0032968	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan