Gene detail

Detailed information of evm.model.ptg000055l.182 in Aurelia coerulea

Genomic Location: chr1:45141967...45169669
NR annotation: CAH3039394.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.ptg000055l.182

ATGGACGACGAAGAGGAGCAAAACAACGAACTGCTTGCTTTAGAAGCGATTTACGAAGAACGACAATTCATCAGATCGAAAGAAGAACTTGGTGGGGAAATCAAAATCTTCTTAGATGTTTCTCACCCATTTAGAATTATTTTTGCCAGCTCAAAATCAAGTGGAACAGCTACAAATGAGGGAGAGAATTCAGAACTGGAAGTGAATTTTTTGCCGCCCATCGTCCTAAATTTCAGTTATCCTTCAGATTACCCCTCAGCAAAGCCACCGAATTATACCTTGTCATGCAAATGGCTAAACAGATCACAGCTTCGAATCTTATGCAAAGAGTTGGAACAACAATGGATCAATAACGGACCAGGTTTGGTTATTCTCTTTGAATGGGTACAATTTTTAACAGAAGAGACCAAGGAATTGCTAGAAATTGAGTCCCCTTTTGTCATAGAAGATATTACAAGGAATAAATATGCGAGAAGGGTAAACATGGTATCAAGCAAATGTGATGACCATGCAATCCAAGATGTTGCTTCCATTGCAGAATTAAAAGATTTCTTGATAGAGTATGATAATTATGAGCAAAGCAGGCAATTTGATACAACACTTTTTGCCTGTAGTGTCTGTTTTATGGAGAAGCTTGGAGAGAAATGTTGTTCCTTTTACCCCTGCAAGCATGTCTTCTGTAATGAATGCATGTCAGAGTATTTCAAACTTCAAATAAAAGATGGTGCAGTGAACGCTCTTACATGCCCTTATGACAAATGTGAATCACAAGCAACTCCAAGCCAAATTAGGAAACTGGTTGTTGAGGAAGATTATGAAAAATATGAGAAGTTTTTACTTCAATCAACACTTGACTGCATGACTGATGTCATTCTCTGCCCAAGAAATATTTGCCAGTCACCAGTTTTGTTAGAAAATGGCTCAACTATCGGAATGTGTGCCAAATGCTCATTTGCATTTTGTACCATGTGTAGAAGGTCATACCATGGTGTTTCAGCATGCCCTATAAATGAATCTGAATTTGCTGATCTCCGCAGAAAATATGCAACTGCTGGACCCGAGGAGAAGCTTCGGCTAGAGAAAAGATATGGAAGGCAGAATTTGAAATATGCACTTGAAGATGCTGTATCTGAGGAATGGATAAAAGCTAATTCAAAGAAATGCCCCAGCTGTAAATCAATCATTCAGAAAATTAGTGGCTGTAACAAAATGACTTGTTATAGATGTCAGGGGTGTTTTTGTTGGTTGTGCCTTGGTACCGTCTCAAAATCAAATCCTTATCTGCACTTTAATGATGTACATAGCAAATGTTTCAATAAGTTATTTGAAGGAGTGGAGGAAGAACCTGAGGATTATGAATGGTTTCAATATGTGATACGTGCATTCTTGGCAGGTTTTGATGAGATTGATATTTGGTGTAATCTGGTTGTAGGAAAATGCAGAGTTGAAGGCATCATGATCAAACATGGAGAAGATCACGTGTCACTGAATAATCATACCAACATACTTTATCTGTCCAAACAGGATCCACCTCTCATTTTATATAAGCATTTCGATGGCATGTTAAAGAATGAAAAAGGTGACAAATGTGTAGGAATGGGATTGAATGACGGTATATATCTGTCAGTGGTGATCCCAGAGACAACAACAAAACCATCTCTGTCATTACCGACCAGTGTGCTTATGCCAGAGGCAACACCAACGCCATCGCTGTCATTGCCGACCAGTGTGCTGATCCCAGAGGCAACACCAACACCATCTCTGTCATTACCGACCAGTGGCATCATGATCAAACATGGAGAAGATCACGTGTCACTGGATAATCATACCAACAGACTCTATCTGTCCAAACAGGATCCACCTCTCATTTTATATAAGCATTTCGATGGCATGTTAAAGAATGAAAAAGGTGACAAATGTGTAGACATAGGACGCCATCTTGGTATTTATCTGTCAGACAGCTGCTTTCGTGCTAACAAGTACAGCAATACTTCTGAAACTTACAAAATGATCTATGTTATCGCTTATTGTTGGAAAAGAAGTGGAACTGAGATGATTTATACAGAATGTACCCCAATATCTTATGGTTTCATAGAAGTGCTGCTGATCCCAGAGGCAACACCAACACCATCTCTGTCATTACCGACCAGTGTGCTGGTCCCAGAGGCAACACCAACACCATCTCTGTCATTACCGACCAGTGTGGTGATCCCAGAGGCAACATCAACACCATCTCTGTCATTACCGACCAGTGCTGCTCAACCAATACAACAAATCTTCCCAACTGCATTCTTTACTAGCATACTGTTTACTGGCAAGAGGTTTGTAGGCCATGTAGCAAAGACCATGCAAGTAAAGATTGTTGAGAGATGCTTCATGGTTTGCCTCGAATGCATCCAAACAAAATCAACATGTCACTGCTCATCATTTAACATCAAACGTTCTCCACCAAAATCATCATCTTCACTTTTATGCGAAATAAATGATTCGAATCATCATGCAATGCCACGTGACTTGGTCGAAAGAGCCGATTATCAATATTACGAAGTTATGTAA

Transcript

evm.model.ptg000055l.182

Protein

Uniprot

Gene family

Uniprot term	Description
Q9UBS8	E3 ubiquitin-protein ligase RNF14 OS=Homo sapiens OX=9606 GN=RNF14 PE=1 SV=1
Q9JI90	E3 ubiquitin-protein ligase RNF14 OS=Mus musculus OX=10090 GN=Rnf14 PE=1 SV=2
F1RB95	E3 ubiquitin-protein ligase RNF14 OS=Danio rerio OX=7955 GN=rnf14 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05773	RWD	RWD domain	Domain	Interproscan
PF01485	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR051628	Family	Linear Ubiquitination-Associated E3 Ligases	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR002867	Domain	IBR domain	Interproscan
IPR047548	Domain	E3 ubiquitin-protein ligase RNF14, Rcat domain	Interproscan
IPR006575	Domain	RWD domain	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR031128	Domain	E3 ubiquitin-protein ligase RNF14, RING finger, HC subclass	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22770	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0097039	Biological Process	protein linear polyubiquitination	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan