Gene detail

Detailed information of evm.model.scaffold_28903.10 in Platygyra sinensis

Genomic Location: scaffold_28903:72140...77647
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02045 all species →	CBFB_NFYA	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001289 all species →	Family	Nuclear transcription factor Y subunit A	Interproscan
IPR018362 all species →	Conserved_site	CCAAT-binding factor, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12632 all species →	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016602 all species →	Cellular Component	CCAAT-binding factor complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08064	NFYA, HAP2; nuclear transcription factor Y, alpha	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.