Gene detail

Detailed information of evm.model.scaffold_33741.3 in Platygyra sinensis

Genomic Location: scaffold_33741:23883...37664
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.scaffold_33741.3

ATGGATTTTCGCAATTTAACACTACGTGGAACACAACAGTCCTCTGGATCAGATCAGTCCCCTTGGAGATCATTTCAAGTACCAACTCGTTCATCAAGGTGGCAAAGACATGAACCTGTAGCTTGGAAAGAAGTGTTGGAAGGTCCTGGAGCATGCAAAAACCCTATTTTACTGTCAGATCCGGGCCAGAAAGTTATCAGAGCTATCAAAGAAATTTATGGACCACGCCAAGGCGTGACTAATCACTGCACACCGCAACAAGGCAAGTCTTCCGAATATTACCTTAAGGAGCCAAAGGCTGAACCAAGGAGACAACTATGTTTTATTGGAGATCCCACACTTGAAGAAAGAAATGATTTACAGGAGCTAAGCACAGTACTGTCTTGTGGTATACAGCAAAGATTAGAGACAAATGCCACAGCCTTAAGAAATTTGCCTTCACACCAGCCCCAGTCTGAGGAAGAAGAATCACCTTACTTTGCTAAAACAGACCATACGTCATTAAGGGAGGAGAAAAATAACGTTCAGTCAAGAAGGAACATTGAAAGCGCGACAAACAAAAGGAAAACACAGCAGAGTCCAATCACCAGTTACCTCAAAGAAAGGAAAACTGTTCAAGGGAACGATGCTAAGAGAGCAAAAACAGCCGACACAGAAACTACACTGAAGGAAGATATCATCAAGAATCAAAACGGAGGAAGCAAAACAAGGAAAAGTCATCCTGTAAAAGTCTCGTCGCTGAGTCCAGGTCAAAGAGAGGTGTTGGAACAGAACCTCAAATCAGCGGAAGAGGTCGCTTGTACTCTGGTTTATGAAGACGGGTGGTCGCTCTTAAGACCGAATAAAAAACAAGCTGCTGCCCTGGTTGTTGCTCTACCTTGGTCTGAAACGACTTCGAGTACAACTGATTCTTCTCAAGGCCGTAAGGGTCCACTAAGGTTCGTGGAAATTCCTGTAGACACAGCGGAGGAGTCTTTAACAAACTGGTGCAGGAGAGTGGTGAATGATCTATTGGCGTCATCATCGACGAGGAAAATCTGCTTCGATTCCCAGAAAATAGTTCGGTATCTTGTGGAGACGACCCATTATGACGTCAGAAAAGCTTGTCTTAGGTGGCGTCTTCTTGATCCTAGAATAGCTGCTTGGCTACTAAACCCGGACCACCCGCCAGGAACCTTTGAAGAAGTTCTTACATCCGTCCAGCTCAGACTTCCAGAGAGTGGGGAAAAGGATGATTCAATGATCTGCCAAGATGTTGCGATGCTTGGGCCTCTCATGGTAAAACAATATGGGAAGCTTAAGGCACTATCACTCTGGGACTTGTTCATCAACATCGAGACTCCGCTTTGTTCAATGCTAGCAGTAATGGAAACGCAGGGAATCGGAGTCAACTCTCAAGTCTTGATTGAGGCCAGCAATACCCTTAAGATGAAAATTGTTAAGGTCGAAGCAGAAGCCCACAAGGCTGCAGGGCATCCTTTTCTTATCAACAGTCCTCAGCAGCTGAGAGAGGTGCTGTTTGAAGAGCTGAGACTAGACCAAAAATGCAAGAAGAAGCTTGCAAGAACCACAATCAAGAATTACAAATCTACTTCAGAAGCTGTGCTGCTTCACCTACAAGAGTTTCATCCATTACCAAAGCTTGTTCTGCAGTACAGACATTTAGTAAAACTGAAGTCAACGTACTTTGATGGAATACTATCACATGTCCAAGAGGGAATTCTTTTAACAAGCTGGGACCAAACAGCAGCAGCCACTGGACGACTTACGTCAGCAAATCCAAATCTTCAGTCCATCCCAAAACAAGTTATAGAGGTATCTGGAGTCAAGAAACAGCTCATTGTAGGCAAACCAGAAGAAGTGGTAACTATTTATGCACGGAATGCTTACAGGAGTAGAGAAGGCTGGTTATTACTTGCAGCAGGAAGCGAAAAACTTGGGCATACCCTCAAAGTGAGTGCTGATGAAGCAAAAGGATTCATGGAGAGCTTTTTAGGTTATGTGTCCACCATACTGAACAGAAGACGATGGTTGCCACATATCAAATCTTATGATTTCACCCAAAGATCGCAGGCTGAACGACAGGCTGTCAATTTCATAGTGCAAGGTTCTGCCGCCGATATATGTAAAGCAGCGATGATCCAGGTCATAACTGCCATAAGCGAGGGCACTTCCGCAAGACTGCTGTTACAAATACATGACGAACTTCTACTGGAGGTCCCTGAAGATGAAATTCAGAAAGTGACAGCAAGCGTCAAGTCAATCATGGAGTCCACAGAGAAACTGTGTGGTGGCAAGGTCAAGCTGAAGGTACCTCTTCCTGTTTCTATCAGTATTGGACAGACATGGGGACACATGGAAACCTTCACTGCTTGA

Transcript

evm.model.scaffold_33741.3

ATGGATTTTCGCAATTTAACACTACGTGGAACACAACAGTCCTCTGGATCAGATCAGTCCCCTTGGAGATCATTTCAAGTACCAACTCGTTCATCAAGGTGGCAAAGACATGAACCTGTAGCTTGGAAAGAAGTGTTGGAAGGTCCTGGAGCATGCAAAAACCCTATTTTACTGTCAGATCCGGGCCAGAAAGTTATCAGAGCTATCAAAGAAATTTATGGACCACGCCAAGGCGTGACTAATCACTGCACACCGCAACAAGGCAAGTCTTCCGAATATTACCTTAAGGAGCCAAAGGCTGAACCAAGGAGACAACTATGTTTTATTGGAGATCCCACACTTGAAGAAAGAAATGATTTACAGGAGCTAAGCACAGTACTGTCTTGTGGTATACAGCAAAGATTAGAGACAAATGCCACAGCCTTAAGAAATTTGCCTTCACACCAGCCCCAGTCTGAGGAAGAAGAATCACCTTACTTTGCTAAAACAGACCATACGTCATTAAGGGAGGAGAAAAATAACGTTCAGTCAAGAAGGAACATTGAAAGCGCgacaaacaaaaggaaaacacaGCAGAGTCCAATCACCAGTTACCTCAAAGAAAGGAAAACTGTTCAAGGGAACGATGCTAAGAGAGCAAAAACAGCCGACACAGAAACTACACTGAAGGAAGATATCATCAAGAATCAAAACGGAGgaagcaaaacaaggaaaagtCATCCTGTAAAAGTCTCGTCGCTGAGTCCAGGTCAAAGAGAGGTGTTGGAACAGAACCTCAAATCAGCGGAAGAGGTCGCTTGTACTCTGGTTTATGAAGACGGGTGGTCGCTCTTAAGACCGAATAAAAAACAAGCTGCTGCCCTGGTTGTTGCTCTACCTTGGTCTGAAACGACTTCGAGTACAACTGATTCTTCTCAAGGCCGTAAGGGTCCACTAAGGTTCGTGGAAATTCCTGTAGACACAGCGGAGGAGTCTTTAACAAACTGGTGCAGGAGAGTGGTGAATGATCTATTGGCGTCATCATCGACGAGGAAAATCTGCTTCGATTCCCAGAAAATAGTTCGGTATCTTGTGGAGACGACCCATTATGACGTCAGAAAAGCTTGTCTTAGGTGGCGTCTTCTTGATCCTAGAATAGCTGCTTGGCTACTAAACCCGGACCACCCGCCAGGAACCTTTGAAGAAGTTCTTACATCCGTCCAGCTCAGACTTCCAGAGAGTGGGGAAAAGGATGATTCAATGATCTGCCAAGATGTTGCGATGCTTGGGCCTCTCATGGTAAAACAATATGGGAAGCTTAAGGCACTATCACTCTGGGACTTGTTCATCAACATCGAGACTCCGCTTTGTTCAATGCTAGCAGTAATGGAAACGCAGGGAATCGGAGTCAACTCTCAAGTCTTGATTGAGGCCAGCAATACCCTTAAGATGAAAATTGTTAAGGTCGAAGCAGAAGCCCACAAGGCTGCAGGGCATCCTTTTCTTATCAACAGTCCTCAGCAGCTGAGAGAGGTGCTGTTTGAAGAGCTGAGACTAGACCAAAAATGCAAGAAGAAGCTTGCAAGAACCACAATCAAGAATTACAAATCTACTTCAGAAGCTGTGCTGCTTCACCTACAAGAGTTTCATCCATTACCAAAGCTTGTTCTGCAGTACAGACATTTAGTAAAACTGAAGTCAACGTACTTTGATGGAATACTATCACATGTCCAAGAGGGAATTCTTTTAACAAGCTGGGACCAAACAGCAGCAGCCACTGGACGACTTACGTCAGCAAATCCAAATCTTCAGTCCATCCCAAAACAAGTTATAGAGGTATCTGGAGTCAAGAAACAGCTCATTGTAGGCAAACCAGAAGAAGTGGTAACTATTTATGCACGGAATGCTTACAGGAGTAGAGAAGGCTGGTTATTACTTGCAGCAGGAAGCGAAAAACTTGGGCATACCCTCAAAGTGAGTGCTGATGAAGCAAAAGGATTCATGGAGAGCTTTTTAGGTTATGTGTCCACCATACTGAACAGAAGACGATGGTTGCCACATATCAAATCTTATGATTTCACCCAAAGATCGCAGGCTGAACGACAGGCTGTCAATTTCATAGTGCAAGGTTCTGCCGCCGATATATGTAAAGCAGCGATGATCCAGGTCATAACTGCCATAAGCGAGGGCACTTCCGCAAGACTGCTGTTACAAATACATGACGAACTTCTACTGGAGGTCCCTGAAGATGAAATTCAGAAAGTGACAGCAAGCGTCAAGTCAATCATGGAGTCCACAGAGAAACTGTGTGGTGGCAAGGTCAAGCTGAAGGTACCTCTTCCTGTTTCTATCAGTATTGGACAGACATGGGGACACATGGAAACCTTCACTGCTTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18049 all species →	DNA_pol_P_Exo	DNA polymerase nu pseudo-exo	Domain	Interproscan
PF00476 all species →	DNA_pol_A	DNA polymerase family A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040940 all species →	Domain	DNA polymerase nu, pseudo-exo domain	Interproscan
IPR001098 all species →	Domain	DNA-directed DNA polymerase, family A, palm domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR002298 all species →	Family	DNA polymerase A	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10133 all species →	DNA POLYMERASE I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0097681 all species →	Biological Process	double-strand break repair via alternative nonhomologous end joining	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16618	POLN; DNA polymerase nu	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.