Gene detail

Detailed information of evm.model.scaffold_42823.6 in Platygyra sinensis

Genomic Location: scaffold_42823:46693...47802
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03962 all species →	Mnd1	Mnd1 HTH domain	Domain	Interproscan
PF18517 all species →	LZ3wCH	Leucine zipper with capping helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040453 all species →	Domain	Mnd1, HTH domain	Interproscan
IPR005647 all species →	Family	Meiotic nuclear division protein 1	Interproscan
IPR040661 all species →	Domain	Leucine zipper with capping helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31398 all species →	MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0007131 all species →	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.scaffold_42823.6.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.