Gene detail

Detailed information of evm.model.scaffold_55648.13 in Platygyra sinensis

Genomic Location: scaffold_55648:129586...153237
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.scaffold_55648.13

ATGGGTGTTAATGGCGGCCCTGGAGTTTGGAGACGGCTGAAAGAAGCGTACAGCAGAAATTGGCCGTGGTCTCGATCGACTTCCTCAAGGGATGGAACTGGCACGGTGATTTTCGCTTCAACCAACGAAGTATTGACCTTCGTTTACCGTCCTAACTTGAGCGTCAGGGATATCTGCACTGAAGCAGCTGTGAAAGTTGGCATCTCTCCAGTCGCCTTGGACTTCTTCACCTTGGTAACTGAAGATGGCAGGGGTTTTCTTAACCCAAATAAGGTTCTTAGCGAATCAGAGTGCAGTCAAGTATACTACTTCAAACTGTGCATTAAAGCTTGTCATGGAATGGAGATCAAAGATTTTGACAAGGAAGCATTTGAATATTACTTTCATCAGTGTCGTAAAGACTTCTTGTCAGGAAAGATAGGTGAATTTAGCAAGGAGAACCAAAACAGCTTGGCCCAAGTTCTCCTTTATGAAATTGTTTACCTGGCACGTAGACACGGTGCCCATCTGTCCACCAAAGATGTTATTGACAACCCAGGATCCACGTTATTTGTTGTGCCCATTGCCTATTGTCAAGGCAAGATTGTCTTATCCAAATGGGGCCGTTATCGTATTAAAAAGCTACTCCAGAGAGGAATATTTGCTGACTACCCTCTAGATGAGACAAAATCATTTCTCAAAGTGAATGTAACCCAATACGAGGTTCTAACAGAACAACAGGTCAAATCTGAGTATGTCAGTACCTTAGAAAGAGCTGAAGACTTTTTTGTGCACAAGTTTTCTTTTGAAAAGGTTTATGGTCAAGTGAGTAGAAAGTTTGAGGTTCTCATCAGTGCAGAATATGGAATCAAGAAGAGGAGATTAGACATTGAGAACAGTCTTCCTGAGGGCATAGTGGAAAAATTCGCTGATGTAGAAGGATTAGAATTTGACCGTATGAGGAATGTTGTCAGAATTTTACGGAAAGAGTGTAAAACAGAGGAGTTAACAGCCAGCTCTACACAAGACGCAGATTCCCTTATGATGCTGATTGAGGGATATTACAGACTCATGGTTAACCAGTACAAGCAGCTCAATGTACGAGGTTCAAAGAGAGCAGGTGCCATACCATGTCATGGGCCTATCTTTCGTAACAAGGCAGAATATCTCTTACAAAAAGGACCCAAAGAGGATGGTTCATTTCTGCTTCGAAGGAAAAGAAATACCCACTGGAATCATGTGCTGTCAGTGTATGTGGAAGACACAGTTAAGAACTATGACATTATCTGGGATGACTCCACTTCCCCTGGTTTTTATCACCTGAAGGATGCAAAGAGAGCATTTTCAGACTTATTAGGACTGGTTCAACACTACAAGCAGTCTGCGGATGGTCTCCCTGTGTGCTTGAAAGAGATACTCAAACCAAAAACAGAAGGTTTTGCTGCGCTGCTGGACCGTCAGGCCATGGTGCCTCCAGTACCAGAAGTCCACCTGGTCAATGATGCTAACCAAATTGACAATTTGGAACTTGAGCCTGGAAATCCATCATCAAAATGGGGTGAGTTTGGTGAAGTCAGGAAGGGATCCTTTTGTGCATCTGCTGAAGAACAGCTCTATGTCATTTCTAGGGCATTGGTGAAGCCTATTGGAAGAGAAAGAATCAGACACTACAATGAAGCGATGGGAACCTTTTTGGAACTTCAGAATCCTTATCTGACTCAGTTTTATGGCATTACTGAGACAGAAAAAGCCTTGGTCTTTGTGTTTGAGTTCGCAGCAGAAGGTCCTCTAGACCAGTACATAAAGAGAGAAAGCACAAAAGAAATTGGAATAACCAAAGGAAGGGTCATTTCCTATGCAGCACAGATTGCTGAAGGAATGATGTTTCTACATAGCAAAAACTGTGTTCATGGTCGTCTGAATGCACACAATGTGCTTGTCGCCAATGAAGAATGTATAAAGATCAGTGACTTTGGTCTGTTGTACCTTGTGCAGAATGGCCAGTGCTTCTATAACTCTACCACAAAAGGATTCGGGTGA

Transcript

evm.model.scaffold_55648.13

ATGGGTGTTAATGGCGGCCCTGGAGTTTGGAGACGGCTGAAAGAAGCGTACAGCAGAAATTGGCCGTGGTCTCGATCGACTTCCTCAAGGGATGGAACTGGCACGGTGATTTTCGCTTCAACCAACGAAGTATTGACCTTCGTTTACCGTCCTAACTTGAGCGTCAGGGATATCTGCACTGAAGCAGCTGTGAAAGTTGGCATCTCTCCAGTCGCCTTGGACTTCTTCACCTTGGTAACTGAAGATGGCAGGGGTTTTCTTAACCCAAATAAGGTTCTTAGCGAATCAGAGTGCAGTCAAGTATACTACTTCAAACTGTGCATTAAAGCTTGTCATGGAATGGAGATCAAAGATTTTGACAAGGAAGCATTTGAATATTACTTTCATCAgTGTCGTAAAGACTTCTTGTCAGGAAAGATAGGTGAATTTAGCAAGGAGAACCAAAACAGCTTGGCCCAAGTTCTCCTTTATGAAATTGTTTACCTGGCACGTAGACACGGTGCCCATCTGTCCACCAAAGATGTTATTGACAACCCAGGATccacgttatttgttgtgcccattgcctaTTGTCAAGGCaagattgtcttatccaaatgGGGCCGTTATCGTATTAAAAAGCTACTCCAGAGAGGAATATTTGCTGACTACCCTCTAGATGAGACAAAATCATTTCTCAAAGTGAATGTAACCCAATACGAGGTTCTAACAGAACAACAGGTCAAATCTGAGTATGTCAGTACCTTAGAAAGAGCTGAAGACTTTTTTGTGCAcaagttttcttttgaaaagGTTTATGGTCAAGTGAGTAGAAAGTTTGAGGTTCTCATCAGTGCAGAATATGGAATCAAGAAGAGGAGATTAGACATTGAGAACAGTCTTCCTGAGGGCATAGTGGAAAAATTCGCTGATGTAGAAGGATTAGAATTTGACCGTATGAGGAATGTTGTCAGAATTTTACGGAAAGAGTGTAAAACAGAGGAGTTAACAGCCAGCTCTACACAAGACGCAGATTCCCTTATGATGCTGATTGAGGGATATTACAGACTCATGGTTAACCAGTACAAGCAGCTCAATGTACGAGGTTCAAAGAGAGCAGGTGCCATACCATGTCATGGGCCTATCTTTCGTAACAAGGCAGAATATCTCTTACAAAAAGGACCCAAAGAGGATGGTTCATTTCTGCTTCGAAGGAAAAGAAATACCCACTGGAATCATGTGCTGTCAGTGTATGTGGAAGACACAGTTAAGAACTATGACATTATCTGGGATGACTCCACTTCCCCTGGTTTTTATCACCTGAAGGATGCAAAGAGAGCATTTTCAGACTTATTAGGACTGGTTCAACACTACAAGCAGTCTGCGGATGGTCTCCCTGTGTGCTTGAAAGAGATACTCAAACCAAAAACAGAAGGTTTTGCTGCGCTGCTGGACCGTCAGGCCATGGTGCCTCCAGTACCAGAAGTCCACCTGGTCAATGATGCTAACCAAATTGACAATTTGGAACTTGAGCCTGGAAATCCATCATCAAAATGGGGTGAGTTTGGTGAAGTCAGGAAGGGATCCTTTTGTGCATCTGCTGAAGAACAGCTCTATGTCATTTCTAGGGCATTGGTGAAGCCTATTGGAAGAGAAAGAATCAGACACTACAATGAAGCGATGGGAACCTTTTTGGAACTTCAGAATCCTTATCTGACTCAGTTTTATGGCATTACTGAGACAGAAAAAGCCTTGGTCTTTGTGTTTGAGTTCGCAGCAGAAGGTCCTCTAGACCAGTACATAAAGAGAGAAAGCACAAAAGAAATTGGAATAACCAAAGGAAGGGTCATTTCCTATGCAGCACAGATTGCTGAAGGAATGATGTTTCTACATAGCAAAAACTGTGTTCATGGTCGTCTGAATGCACACAATGTGCTTGTCGCCAATGAAGAATGTATAAAGATCAGTGACTTTGGTCTGTTGTACCTTGTGCAGAATGGCCAGTGCTTCTATAACTCTACCACAAAAGGATTCGGGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF18379 all species →	FERM_F1	FERM F1 ubiquitin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR041155 all species →	Domain	FERM F1 lobe ubiquitin-like domain	Interproscan
IPR051286 all species →	Family	Janus Kinase (JAK)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45807 all species →	TYROSINE-PROTEIN KINASE HOPSCOTCH	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004715 all species →	Molecular Function	non-membrane spanning protein tyrosine kinase activity	Interproscan
GO:0005126 all species →	Molecular Function	cytokine receptor binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007259 all species →	Biological Process	cell surface receptor signaling pathway via JAK-STAT	Interproscan
GO:0019221 all species →	Biological Process	cytokine-mediated signaling pathway	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.scaffold_55648.13.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.