Gene detail

Detailed information of evm.model.scaffold_7546.11 in Platygyra sinensis

Genomic Location: scaffold_7546:92986...108039
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.scaffold_7546.11

ATGTCACACAAAATTGATATATTCTGGACGAAATTGATTTATAAATTTGTATTATTACGCATAACAATAATTTATTTAACAATTTTGTCCGCCAAAAAACCCCAAGAGACTGGGCATCAACGTCGAAAGCTCAGTGGGGCTGGGAATGAGACTCAATTCAACATGGCGGGAGGAGAGGACAAAACAGTGCTTCAAGGTGATGGTAAGAAAAGAAACTACAGGAAAGACAAGCCTTGGGATCACGAGGGTATTGATCACTGGAAGATTGAATCATTTACAAGTGAAGATAATCCACATGGTATGCTGGAAGAGAGTTCATTTGCAACTTTGTTTCCAAAATACAGAGAAAAATATCTGCGAGAATTCTGGCCTTTGGTGGAAAAGAAACTTAAAGAATATTCGTTAAAGTGTCAGCTAGATGTTATTGAGGGAAGCATGACAGTTAGTACAACAAGGAAGACATGGGATCCTTATATCATCGTTAAAGCCAGAGATATGATCAAGCTTATGGCAAGAAGTGTTCCCTTTGAGCAGGCTCAGCGTGTTCTGGAAGATGAGGTGGCATGTGACATCATTAAGATAGGATCGCTCGTTCGAAACAGAGAAAGATTTGTTAAGAGAAGACAGAGGCTTATTGGTCCAAATGGAGCAACGTTGAAGGCTCTAGAATTGCTGACACAATGTTACATCATGGTGCAAGGAAACACAGTAGCTACACTGGGCCCATACAAAGGACTAAAACAGGTTCGTAAGGTGGTCGAAGACACAATGAAGAACATTCATCCAATTTATAACATCAAGACACTAATGATCAAAAGAGAATTGGCTAAAGATCCAGAGCTAAAAAATGAATCTTGGGACAGATTTCTGCCAAAGTTTACACAGAGAAATGCAAAGAAGGTCAAAAAATCCAAGTTTAAGAAAAAGGAATATACTCCATTCCCTCCGCCGCAAACAGAAAGCAAGATCGATAAACAGTTAGCAAGTGGAGAATACTTTCTTCAAGAGAAAGAAAGAAGATTAAAGGCCCAACAGGAAAGAAAGGCACGGCAAGTGGCAGCAGAGGAAAAGAGGAAAGCTCAGCGGGAACAGGCATTCATTCCGCCAGTGGAGGAAAAACCCAAAAAAGAAACTAAGAAGAAAGAGAGTGATAGCAAAGTGGACGTGGAGGCATTCAAAAAGAAAATAAAAAGTTCACAGGTGCCCGCTCTCCTCAGAAAAAAATCAGAGACCCCGGGCGGTTGTAAACAGGTTATGTGCGCAGCCGGGCTGGAGTCCACCTTTGTGACAATTCAATCCGCGAGCAAGATGCAGTCATCATCACAAAACACATGGACACCACATTGCCGCGAGTATTGCGATGGCAACATAGTTGAGTTCTATTGCCCAGAATGCGCAGCAATGTTTTGCCGCGATTGCTATGACAGGGAACATTGTGGAAATGAACGAAAATCACAACACGGAAAACTCACTGAACTGAGGGCCATTTGTAGCGTTCACAAGCACACTCTAGATTATTTCAGCCTCACGCTTCTTCAACCCATGTGCATTATTTGCAAAAAGGAAACCATGCTTACTCCAGAATATGAACATCATGTCATCGACCATATTGAGACGACTGTACCAAAGCTAAGATCTCTCATGGAAAAGAAGCTGGAAAGTGCTTCCGAAATGATTGACAGATTGAACCATGAATTAGATAGGGTAGAAAATGTCGCAAGAAATACATTGATCACATCAGTTAGTTACATCCAGTGTTGTTTTGCAAGGCTGCGGCAAATCCTTGATGACAGAGAAGTCGAACTTTTGACGAATGCAAGAAAATACTTTGATGACTTTGTGGAATTTGGTGAAGGGAGAATGGAAGCACGGAATGCTGTGAGAGACCTCAATGCTCTGTCTGACGAAGGAAAATTGCTTTTAAATAAAGATGCCAGAAGCCTTGTTGTGGAATTTCCATCAGTGTTCATGCAACTCAAAGACCTGTGCAGTTCAACGGTGTGTGAACGACAGACCAAGAAGTTGAAAATTATAATTGATTTTGAGACAGATATTCTTGATGAGCTGAAGCAAGTTGGAATCATGAAGTCATACACTATTGACCAAACTGCAGATGAGAAAACAGGATGGTCAATAGTGGCAAATAATTATGATTACAGCAGCTCTTTAGATTTTAAAATAGGTATGAGGAGGCATTTCTCTCACCCACCCTCTCAGGAAGAACATAGCAACAATGAACCCACAGATGGTAACACCAATGTTATCAGTTTTGACTTAACGGATGAGTCTAACAAGTCACTGAGGACTCCATTGAAAGCCACAATAGTGACATCATCCAAATTTACATCACCTTCACCTCGAAAGCGAACTTGCAAACCAACTGCCCGGAAGTCTGCTCAATCACCGGAGTGGACACCAGCCTCTCCCATTCAAACCCCCTGTGTAGCTTCACCAAGAAGGAAAAGAGGAGGAGAACTAAGCAAAGAGTTTATGAAATGTGACATCATTCTGACAGAGCTATGGGCTCAAGATGAAAGCTGCCCATTTGTGCGCCCTGTAGATAAGAAACAGTCGCCAGATTACTATAAAGTCATCGAGAATCCCATGGACTTGTCCATTATCAAAGAAAAACTGCACACTCTTCAGTATGCCTCTGCTGTAGATTTCGTGAAAGATATTCGTTTGATGCTTAGCAACTGTGCAAGATATAATCAGCCTGGTTCTTATGTTTTTGCCGCTGGTGAAGTGTTTGGGAGTATCTTCAACCGTTTACTGAAAGAAAACTTTCCTAACTTTGAAAATGTCCTTCTAGAGGATAACGAGAATAATTCAGCTTCCGACAAATAG

Transcript

evm.model.scaffold_7546.11

atgtcacacAAAATTGATAtattctggacgaaattgatttataaatttgtattattacgcataacaataatttatttaacaattttgtCCGCCAAAAAACCCCAAGAGACTGGGCATCAACGTCGAAAGCTCAGTGGGGCTGGGAATGAGACTCAATTCAACATGGCGGGAGGAGAGGACAAAACAGTGCTTCAAGgTGATGGTAAGAAAAGAAACTACAGGAAAGACAAGCCTTGGGATCACGAGGGTATTGATCACTGGAAGATTGAATCATTTACAAGTGAAGATAATCCACATGGTATGCTGGAAGAGAGTTCATTTGCAACTTTGTTTCCAaaatacagagaaaaatatctgcGAGAATTCTGGCCTTTGGTGGAAAAGAAACTTAAAGAATATTCGTTAAAGTGTCAGCTAGATGTTATTGAGGGAAGCATGACAGTTAGTACAACAAGGAAGACATGGGATCCTTATATCATCGTTAAAGCCAGAGATATGATCAAGCTTATGGCAAGAAGTGTTCCCTTTGAGCAGGCTCAGCGTGTTCTGGAAGATGAGGTGGCATGTGACATCATTAAGATAGGATCGCTCGTTCGAAACAGAGAAAGATTTGTTAAGAGAAGACAGAGGCTTATTGGTCCAAATGGAGCAACGTTGAAGGCTCTAGAATTGCTGACACAATGTTACATCATGGTGCAAGGAAACACAGTAGCTACACTGGGCCCATACAAAGGACTAAAACAGGTTCGTAAGGTGGTCGAAGACACAATGAAGAACATTCATCCAATTTATAACATCAAGACACTAATGATCAAAAGAGAATTGGCTAAAGATCCAGAGCTAAAAAATGAATCTTGGGACAGATTTCTGCCAAAGTTTACACAGAGAAATGCAAAGAAGGTCAAAAAATCCAAGTTTAAGAAAAAGGAATATACTCCATTCCCTCCGCCGCAAACAGAAAGCAAGATCGATAAACAGTTAGCAAGTGGAGAATACTTTCTTcaagagaaagaaagaagattAAAGGCCCAACAGGAAAGAAAGGCACGGCAAGTGGCAGCAGAGGAAAAGAGGAAAGCTCAGCGGGAACAGGCATTCATTCCGCCAGTGGAGGAAAAacccaaaaaagaaactaagAAGAAAGagagtgatAGCAAAGTGGACGTGGAGgcattcaaaaagaaaataaaaagttcaCAGGTGCCCGCTCTCctcagaaaaaaatcagagaCCCCGGGCGGTTGTAAACAGGTTATGTGCGCAGCCGGGCTGGAGTCCACCTTTGTGACAATTCAATCCGCGAGCAAGATGCAGTCATCATCACAAAACACATGGACACCACATTGCCGCGAGTATTGCGATGGCAACATAGTTGAGTTCTATTGCCCAGAATGCGCAGCAATGTTTTGCCGCGATTGCTATGACAGGGAACATTGTGGAAATGAACGAAAATCACAACACGGAAAACTCACTGAACTGAGGGCCATTTGTAGCGTTCACAAGCACACTCTAGATTATTTCAGCCTCACGCTTCTTCAACCCATGTGCATTATTTGCAAAAAGGAAACCATGCTTACTCCAGAATATGAACATCATGTCATCGACCATATTGAGACGACTGTACCAAAGCTAAGATCTCTCATGGAAAAGAAGCTGGAAAGTGCTTCCGAAATGATTGACAGATTGAACCATGAATTAGATAGGGTAGAAAATGTCGCAAGAAATACATTGATCACATCAGTTAGTTACATCCAGTGTTGTTTTGCAAGGCTGCGGCAAATCCTTGATGACAGAGAAGTCGAACTTTTGACGAATGCAAGAAAATACTTTGATGACTTTGTGGAATTTGGTGAAGGGAGAATGGAAGCACGGAATGCTGTGAGAGACCTCAATGCTCTGTCTGACGAAGgaaaattgcttttaaataaAGATGCCAGAAGCCTTGTTGTGGAATTTCCATCAGTGTTCATGCAACTCAAAGACCTGTGCAGTTCAACGGTGTGTGAACGACAGACCAAGAAGTTGAAAATTATAATTGATTTTGAGACAGATATTCTTGATGAGCTGAAGCAAGTTGGAATCATGAAGTCATACACTATTGACCAAACTGCAGATGAGAAAACAGGATGGTCAATAGTGGCAAATAATTATGATTACAGCAGCTCTTTAGATTTTAAAATAGGTATGAGGAGGCATTTCTCTCACCCACCCTCTCAGGAAGAACATAGCAACAATGAACCCACAGATGGTAACACCAATGTTATCAGTTTTGACTTAACGGATGAGTCTAACAAGTCACTGAGGACTCCATTGAAAGCCACAATAGTGACATCATCCAAATTTACATCACCTTCACCTCGAAAGCGAACTTGCAAACCAACTGCCCGGAAGTCTGCTCAATCACCGGAGTGGACACCAGCCTCTCCCATTCAAACCCCCTGTGTAGCTTCACCAAGAAGGAAAAGAGGAGGAGAACTAAGCAAAGAGTTTATGAAATGTGACATCATTCTGACAGAGCTATGGGCTCAAGATGAAAGCTGCCCATTTGTGCGCCCTGTAGATAAGAAACAGTCGCCAGATTACTATAAAGTCATCGAGAATCCCATGGACTTGTCCATTATCAAAGAAAAACTGCACACTCTTCAGTATGCCTCTGCTGTAGATTTCGTGAAAGATATTCGTTTGATGCTTAGCAACTGTGCAAGATATAATCAGCCTGGTTCTTATGTTTTTGCCGCTGGTGAAGTGTTTGGGAGTATCTTCAACCGTTTACTGAAAGAAAACTTTCCTAACTTTGAAAATGTCCTTCTAGAGGATAACGAGAATAATTCAGCTTCCGACAAATAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17903 all species →	KH_8	Krr1 KH1 domain	Domain	Interproscan
PF21800 all species →	KRR1-like_KH2	KRR1 small subunit processome component, second KH domain	Domain	Interproscan
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR041174 all species →	Domain	KRR1 small subunit processome component, first KH domain	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan
IPR048550 all species →	Domain	KRR1 small subunit processome component, first KH domain, eukaryotes	Interproscan
IPR048548 all species →	Domain	KRR1 small subunit processome component, second KH domain	Interproscan
IPR024166 all species →	Family	Ribosomal RNA assembly KRR1	Interproscan
IPR048549 all species →	Domain	KRR1 small subunit processome component, second KH domain, eukaryotes	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12581 all species →	HIV-1 REV BINDING PROTEIN 2, 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.scaffold_7546.11.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.