Gene detail

Detailed information of g1.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_169624077.1, formate--tetrahydrofolate ligase [Pacificispira spongiicola]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1GE26	Formate--tetrahydrofolate ligase OS=Ruegeria sp. (strain TM1040) OX=292414 GN=fhs PE=3 SV=1
Q5LNV0	Formate--tetrahydrofolate ligase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=fhs1 PE=3 SV=1
Q28TR4	Formate--tetrahydrofolate ligase OS=Jannaschia sp. (strain CCS1) OX=290400 GN=fhs PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000050 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000386 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000787 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001676 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002612 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002734 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003125 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004704 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008445 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0011024 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14664 all species →	RICTOR_N	Rapamycin-insensitive companion of mTOR, N-term	Domain	Interproscan
PF14668 all species →	RICTOR_V	Rapamycin-insensitive companion of mTOR, domain 5	Domain	Interproscan
PF14663 all species →	RasGEF_N_2	Rapamycin-insensitive companion of mTOR RasGEF_N domain	Domain	Interproscan
PF14666 all species →	RICTOR_M	Rapamycin-insensitive companion of mTOR, middle domain	Domain	Interproscan
PF01423 all species →	LSM	LSM domain	Domain	Interproscan
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF08016 all species →	PKD_channel	Polycystin cation channel	Family	Interproscan
PF20519 all species →	Polycystin_dom	Polycystin domain	Domain	Interproscan
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF01268 all species →	FTHFS	Formate--tetrahydrofolate ligase	Family	Interproscan
PF03747 all species →	ADP_ribosyl_GH	ADP-ribosylglycohydrolase	Family	Interproscan
PF09588 all species →	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028267 all species →	Domain	Rapamycin-insensitive companion of mTOR, N-terminal domain	Interproscan
IPR029452 all species →	Domain	Rapamycin-insensitive companion of mTOR, domain 5	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR028268 all species →	Family	Pianissimo family	Interproscan
IPR029453 all species →	Domain	Rapamycin-insensitive companion of mTOR, domain 4	Interproscan
IPR029451 all species →	Domain	Rapamycin-insensitive companion of mTOR, middle domain	Interproscan
IPR027248 all species →	Family	Small nuclear ribonucleoprotein Sm D2	Interproscan
IPR001163 all species →	Domain	Sm domain, eukaryotic/archaea-type	Interproscan
IPR010920 all species →	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR047575 all species →	Domain	Sm domain	Interproscan
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR051170 all species →	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR023674 all species →	Homologous_superfamily	Ribosomal protein uL1-like	Interproscan
IPR013122 all species →	Domain	Polycystin cation channel, PKD1/PKD2	Interproscan
IPR051223 all species →	Family	Polycystin	Interproscan
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR046791 all species →	Domain	Polycystin domain	Interproscan
IPR003915 all species →	Family	Polycystic kidney disease type 2 protein	Interproscan
IPR000559 all species →	Family	Formate-tetrahydrofolate ligase, FTHFS	Interproscan
IPR020628 all species →	Conserved_site	Formate-tetrahydrofolate ligase, FTHFS, conserved site	Interproscan
IPR050792 all species →	Family	ADP-ribosylglycohydrolase	Interproscan
IPR036705 all species →	Homologous_superfamily	ADP-ribosylation/Crystallin J1 superfamily	Interproscan
IPR005502 all species →	Family	ADP-ribosylation/Crystallin J1	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR051703 all species →	Family	NF-kappa-B Signaling Regulator	Interproscan
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR019080 all species →	Domain	YqaJ viral recombinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13298 all species →	CYTOSOLIC REGULATOR PIANISSIMO	Interproscan
PTHR12777 all species →	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2	Interproscan
PTHR47968 all species →	CENTROMERE PROTEIN E	Interproscan
PTHR12231 all species →	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan
PTHR10877 all species →	POLYCYSTIN FAMILY MEMBER	Interproscan
PTHR16222 all species →	ADP-RIBOSYLGLYCOHYDROLASE	Interproscan
PTHR46609 all species →	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031929 all species →	Biological Process	TOR signaling	Interproscan
GO:0031932 all species →	Cellular Component	TORC2 complex	Interproscan
GO:0038203 all species →	Biological Process	TORC2 signaling	Interproscan
GO:0043539 all species →	Molecular Function	protein serine/threonine kinase activator activity	Interproscan
GO:0051897 all species →	Biological Process	positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction	Interproscan
GO:0008380 all species →	Biological Process	RNA splicing	Interproscan
GO:0030532 all species →	Cellular Component	small nuclear ribonucleoprotein complex	Interproscan
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0005682 all species →	Cellular Component	U5 snRNP	Interproscan
GO:0005685 all species →	Cellular Component	U1 snRNP	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan
GO:0034715 all species →	Cellular Component	pICln-Sm protein complex	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005262 all species →	Molecular Function	calcium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0050982 all species →	Biological Process	detection of mechanical stimulus	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0004329 all species →	Molecular Function	formate-tetrahydrofolate ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02362	entD; enterobactin synthetase component D	EC:6.3.2.14 EC:2.7.8.-	Polyketide biosynthesis proteins	ko01008	deepkoala
K04988	PKD1L2; polycystin 1L2	-	Ion channels	ko04040	deepkoala
K08267	RICTOR; rapamycin-insensitive companion of mTOR	-	Membrane trafficking	ko04131	deepkoala
K11096	SNRPD2, SMD2; small nuclear ribonucleoprotein D2	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.