Gene detail

Detailed information of g10015.t1 in Acropora digitifera

Genomic Location: chr4Alt:32008965...32013502
NR annotation: XP_029186961.1, bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-like [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GND3	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-A OS=Xenopus laevis OX=8355 GN=jmjd6-a PE=2 SV=1
Q9ERI5	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Mus musculus OX=10090 GN=Jmjd6 PE=1 SV=2
Q6AYK2	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Rattus norvegicus OX=10116 GN=Jmjd6 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02373 all species →	JmjC	JmjC domain, hydroxylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR050910 all species →	Family	JMJD6 family arginine demethylases/lysyl-hydroxylases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12480 all species →	ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006909 all species →	Biological Process	phagocytosis	Interproscan
GO:0033749 all species →	Molecular Function	histone H4R3 demethylase activity	Interproscan
GO:0106140 all species →	Molecular Function	P-TEFb complex binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11323	JMJD6; histone arginine demethylase JMJD6	EC:1.14.11.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.