Gene detail

Detailed information of g1002.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_041457172.1, signal peptide peptidase-like 3 [Lytechinus variegatus]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TCT6	Signal peptide peptidase-like 3 OS=Homo sapiens OX=9606 GN=SPPL3 PE=1 SV=2
Q9CUS9	Signal peptide peptidase-like 3 OS=Mus musculus OX=10090 GN=Sppl3 PE=1 SV=3
Q6JPI3	Mediator of RNA polymerase II transcription subunit 13-like OS=Mus musculus OX=10090 GN=Med13l PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000599 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000731 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001107 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002971 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004363 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005472 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006858 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006985 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0009804 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0011690 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF04258 all species →	Peptidase_A22B	Signal peptide peptidase	Family	Interproscan
PF18296 all species →	MID_MedPIWI	MID domain of medPIWI	Domain	Interproscan
PF06333 all species →	Med13_C	Mediator complex subunit 13 C-terminal domain	Domain	Interproscan
PF00022 all species →	Actin	Actin	Family	Interproscan
PF08700 all species →	VPS51_Exo84_N	Vps51/EXO84/COG1 N-terminal	Repeat	Interproscan
PF15996 all species →	PNISR	Arginine/serine-rich protein PNISR	Family	Interproscan
PF00850 all species →	Hist_deacetyl	Histone deacetylase domain	Domain	Interproscan
PF13328 all species →	HD_4	HD domain	Family	Interproscan
PF02824 all species →	TGS	TGS domain	Domain	Interproscan
PF04607 all species →	RelA_SpoT	Region found in RelA / SpoT proteins	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR007369 all species →	Family	Peptidase A22B, signal peptide peptidase	Interproscan
IPR041285 all species →	Domain	MID domain of medPIWI	Interproscan
IPR009401 all species →	Domain	Mediator complex subunit Med13, C-terminal	Interproscan
IPR006639 all species →	Family	Presenilin/signal peptide peptidase	Interproscan
IPR051139 all species →	Family	Mediator complex subunit 13	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR004000 all species →	Family	Actin family	Interproscan
IPR033370 all species →	Family	Conserved oligomeric Golgi complex subunit 1	Interproscan
IPR031937 all species →	Family	PNN-interacting serine/arginine-rich protein	Interproscan
IPR023801 all species →	Domain	Histone deacetylase domain	Interproscan
IPR023696 all species →	Homologous_superfamily	Ureohydrolase domain superfamily	Interproscan
IPR000286 all species →	Family	Histone deacetylase family	Interproscan
IPR037138 all species →	Homologous_superfamily	Histone deacetylase domain superfamily	Interproscan
IPR050284 all species →	Family	Histone deacetylase and polyamine deacetylase	Interproscan
IPR007685 all species →	Domain	RelA/SpoT	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR004811 all species →	Family	RelA/SpoT family	Interproscan
IPR004095 all species →	Domain	TGS	Interproscan
IPR012676 all species →	Homologous_superfamily	TGS-like	Interproscan
IPR033655 all species →	Domain	RelA/SpoT, TGS domain	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48249 all species →	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13	Interproscan
PTHR11937 all species →	ACTIN	Interproscan
PTHR31658 all species →	CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 1	Interproscan
PTHR31518 all species →	ARGININE/SERINE-RICH PROTEIN PNISR	Interproscan
PTHR10625 all species →	HISTONE DEACETYLASE HDAC1-RELATED	Interproscan
PTHR21262 all species →	GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042500 all species →	Molecular Function	aspartic endopeptidase activity, intramembrane cleaving	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0005869 all species →	Cellular Component	dynactin complex	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0017119 all species →	Cellular Component	Golgi transport complex	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0016607 all species →	Cellular Component	nuclear speck	Interproscan
GO:0048786 all species →	Cellular Component	presynaptic active zone	Interproscan
GO:0004407 all species →	Molecular Function	histone deacetylase activity	Interproscan
GO:0016575 all species →	Biological Process	obsolete histone deacetylation	Interproscan
GO:0015969 all species →	Biological Process	guanosine tetraphosphate metabolic process	Interproscan
GO:0005618 all species →	Cellular Component	cell wall	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01139	spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase	EC:2.7.6.5 EC:3.1.7.2	Ribosome biogenesis	ko03009	deepkoala
K13170	PNISR, SFRS18; arginine/serine-rich protein PNISR	-	Spliceosome	ko03041	deepkoala
K16576	ACTR10, ARP11; actin-related protein 10	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.