Detailed information of g1002.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_041457172.1, signal peptide peptidase-like 3 [Lytechinus variegatus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8TCT6Signal peptide peptidase-like 3 OS=Homo sapiens OX=9606 GN=SPPL3 PE=1 SV=2
Q9CUS9Signal peptide peptidase-like 3 OS=Mus musculus OX=10090 GN=Sppl3 PE=1 SV=3
Q6JPI3Mediator of RNA polymerase II transcription subunit 13-like OS=Mus musculus OX=10090 GN=Med13l PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF04258Peptidase_A22BSignal peptide peptidaseFamilyInterproscan
PF18296MID_MedPIWIMID domain of medPIWIDomainInterproscan
PF06333Med13_CMediator complex subunit 13 C-terminal domainDomainInterproscan
PF00022ActinActinFamilyInterproscan
PF08700VPS51_Exo84_NVps51/EXO84/COG1 N-terminalRepeatInterproscan
PF15996PNISRArginine/serine-rich protein PNISRFamilyInterproscan
PF00850Hist_deacetylHistone deacetylase domainDomainInterproscan
PF13328HD_4HD domainFamilyInterproscan
PF02824TGSTGS domainDomainInterproscan
PF04607RelA_SpoTRegion found in RelA / SpoT proteinsFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002110RepeatAnkyrin repeatInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR007369FamilyPeptidase A22B, signal peptide peptidaseInterproscan
IPR041285DomainMID domain of medPIWIInterproscan
IPR009401DomainMediator complex subunit Med13, C-terminalInterproscan
IPR006639FamilyPresenilin/signal peptide peptidaseInterproscan
IPR051139FamilyMediator complex subunit 13Interproscan
IPR043129Homologous_superfamilyATPase, nucleotide binding domainInterproscan
IPR004000FamilyActin familyInterproscan
IPR033370FamilyConserved oligomeric Golgi complex subunit 1Interproscan
IPR031937FamilyPNN-interacting serine/arginine-rich proteinInterproscan
IPR023801DomainHistone deacetylase domainInterproscan
IPR023696Homologous_superfamilyUreohydrolase domain superfamilyInterproscan
IPR000286FamilyHistone deacetylase familyInterproscan
IPR037138Homologous_superfamilyHistone deacetylase domain superfamilyInterproscan
IPR050284FamilyHistone deacetylase and polyamine deacetylaseInterproscan
IPR007685DomainRelA/SpoTInterproscan
IPR043519Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR004811FamilyRelA/SpoT familyInterproscan
IPR004095DomainTGSInterproscan
IPR012676Homologous_superfamilyTGS-likeInterproscan
IPR033655DomainRelA/SpoT, TGS domainInterproscan
IPR012675Homologous_superfamilyBeta-grasp domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48249MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13Interproscan
PTHR11937ACTINInterproscan
PTHR31658CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 1Interproscan
PTHR31518ARGININE/SERINE-RICH PROTEIN PNISRInterproscan
PTHR10625HISTONE DEACETYLASE HDAC1-RELATEDInterproscan
PTHR21262GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0042500Molecular Functionaspartic endopeptidase activity, intramembrane cleavingInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016592Cellular Componentmediator complexInterproscan
GO:0003713Molecular Functiontranscription coactivator activityInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0005869Cellular Componentdynactin complexInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0005794Cellular ComponentGolgi apparatusInterproscan
GO:0006891Biological Processintra-Golgi vesicle-mediated transportInterproscan
GO:0017119Cellular ComponentGolgi transport complexInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0016607Cellular Componentnuclear speckInterproscan
GO:0048786Cellular Componentpresynaptic active zoneInterproscan
GO:0004407Molecular Functionhistone deacetylase activityInterproscan
GO:0016575Biological Processobsolete histone deacetylationInterproscan
GO:0015969Biological Processguanosine tetraphosphate metabolic processInterproscan
GO:0005618Cellular Componentcell wallInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01139spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphataseEC:2.7.6.5
EC:3.1.7.2
Cytoskeleton proteinsko04812deepkoala
Spliceosomeko03041deepkoala
Ribosome biogenesisko03009deepkoala

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