Detailed information of g1003.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047124330.1, vinculin [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O46037Vinculin OS=Drosophila melanogaster OX=7227 GN=Vinc PE=1 SV=1
A0A3B6UES5Vinculin OS=Oscarella pearsei OX=1940113 GN=VIN1 PE=1 SV=1
P19826Vinculin OS=Caenorhabditis elegans OX=6239 GN=deb-1 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyHomeobox

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01079HintHint moduleFamilyInterproscan
PF01571GCV_TAminomethyltransferase folate-binding domainDomainInterproscan
PF09347DUF1989Domain of unknown function (DUF1989)DomainInterproscan
PF08669GCV_T_CGlycine cleavage T-protein C-terminal barrel domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF15309ALMS_motifALMS motifFamilyInterproscan
PF00630FilaminFilamin/ABP280 repeatDomainInterproscan
PF00643zf-B_boxB-box zinc fingerDomainInterproscan
PF01436NHLNHL repeatRepeatInterproscan
PF01044VinculinVinculin familyFamilyInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF03798TRAM_LAG1_CLN8TLC domainDomainInterproscan
PF00046HomeodomainHomeodomainDomainInterproscan
PF00027cNMP_bindingCyclic nucleotide-binding domainDomainInterproscan
PF00520Ion_transIon transport proteinFamilyInterproscan
PF00999Na_H_ExchangerSodium/hydrogen exchanger familyFamilyInterproscan
PF16094PAC1Proteasome assembly chaperone 4FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050387FamilyHedgehog SignalingInterproscan
IPR001767DomainHedgehog protein, Hint domainInterproscan
IPR036844Homologous_superfamilyHint domain superfamilyInterproscan
IPR006222DomainAminomethyltransferase, folate-binding domainInterproscan
IPR028896FamilyAminomethyltransferase-likeInterproscan
IPR018959DomainDomain of unknown function DUF1989Interproscan
IPR029043Homologous_superfamilyGlycine cleavage T-protein/YgfZ, C-terminalInterproscan
IPR027266Homologous_superfamilyGTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1Interproscan
IPR013977DomainGlycine cleavage T-protein, C-terminal barrel domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR029299DomainALMS motifInterproscan
IPR017868RepeatFilamin/ABP280 repeat-likeInterproscan
IPR001258RepeatNHL repeatInterproscan
IPR000315DomainB-box-type zinc fingerInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR001298RepeatFilamin/ABP280 repeatInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR011042Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR003649DomainB-box, C-terminalInterproscan
IPR047153FamilyTRIM45/56/19Interproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036723Homologous_superfamilyAlpha-catenin/vinculin-like superfamilyInterproscan
IPR017997FamilyVinculinInterproscan
IPR006077FamilyVinculin/alpha-cateninInterproscan
IPR000727DomainTarget SNARE coiled-coil homology domainInterproscan
IPR039899DomainBET1, SNARE domainInterproscan
IPR038923FamilyCentrobinInterproscan
IPR050663FamilyAnkyrin Repeat and SOCS BoxInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR016439FamilySphingosine N-acyltransferase Lag1/Lac1-likeInterproscan
IPR006634DomainTRAM/LAG1/CLN8 homology domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR014710Homologous_superfamilyRmlC-like jelly roll foldInterproscan
IPR018490Homologous_superfamilyCyclic nucleotide-binding domain superfamilyInterproscan
IPR000595DomainCyclic nucleotide-binding domainInterproscan
IPR018422FamilyCation/H+ exchanger, CPA1 familyInterproscan
IPR018488Conserved_siteCyclic nucleotide-binding, conserved siteInterproscan
IPR027359Homologous_superfamilyVoltage-dependent channel domain superfamilyInterproscan
IPR005821DomainIon transport domainInterproscan
IPR006153DomainCation/H+ exchangerInterproscan
IPR016565FamilyProteasome assembly chaperone 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11889HEDGEHOGInterproscan
PTHR43757AMINOMETHYLTRANSFERASEInterproscan
PTHR25462BONUS, ISOFORM C-RELATEDInterproscan
PTHR46180VINCULINInterproscan
PTHR34439CENTROBINInterproscan
PTHR24193ANKYRIN REPEAT PROTEINInterproscan
PTHR12560LONGEVITY ASSURANCE FACTOR 1 LAG1Interproscan
PTHR10110SODIUM/HYDROGEN EXCHANGERInterproscan
PTHR15069PROTEASOME ASSEMBLY CHAPERONE 1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016540Biological Processprotein autoprocessingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0003779Molecular Functionactin bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005856Cellular ComponentcytoskeletonInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0005912Cellular Componentadherens junctionInterproscan
GO:0005925Cellular Componentfocal adhesionInterproscan
GO:0008013Molecular Functionbeta-catenin bindingInterproscan
GO:0044291Cellular Componentcell-cell contact zoneInterproscan
GO:0045294Molecular Functionalpha-catenin bindingInterproscan
GO:0005813Cellular ComponentcentrosomeInterproscan
GO:0005814Cellular ComponentcentrioleInterproscan
GO:0007099Biological Processcentriole replicationInterproscan
GO:0051299Biological Processcentrosome separationInterproscan
GO:1902017Biological Processregulation of cilium assemblyInterproscan
GO:1902410Biological Processmitotic cytokinetic processInterproscan
GO:0000976Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0046513Biological Processceramide biosynthetic processInterproscan
GO:0050291Molecular Functionsphingosine N-acyltransferase activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0006812Biological Processmonoatomic cation transportInterproscan
GO:0015385Molecular Functionsodium:proton antiporter activityInterproscan
GO:0015386Molecular Functionpotassium:proton antiporter activityInterproscan
GO:0051453Biological Processregulation of intracellular pHInterproscan
GO:0071805Biological Processpotassium ion transmembrane transportInterproscan
GO:0098719Biological Processsodium ion import across plasma membraneInterproscan
GO:1902600Biological Processproton transmembrane transportInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0015297Molecular Functionantiporter activityInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0043248Biological Processproteasome assemblyInterproscan
GO:0070628Molecular Functionproteasome bindingInterproscan
GO:0080129Biological Processproteasome core complex assemblyInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00605gcvT, AMT; glycine cleavage system T protein (aminomethyltransferase)EC:2.1.2.10
Sphingolipid signaling pathwayko04071deepkoala
Cilium and associated proteinsko03037deepkoala
Proteasomeko03051deepkoala
One carbon pool by folateko00670deepkoala

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