Detailed information of g1005.t2 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_012560296.1, ultraviolet-B receptor UVR8 [Hydra vulgaris]
Species abbreviation CCRUX · all data for this species · gene families

 Sequence
Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q947D2PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRAF1 PE=1 SV=1
Q9FN03Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1
Q4U2R1E3 ubiquitin-protein ligase HERC2 OS=Mus musculus OX=10090 GN=Herc2 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000019 (this species only)
Orthogroup (gene family)OG0004818 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00090
all species →		TSP_1Thrombospondin type 1 domainDomainInterproscan
PF19028
all species →		TSP1_spondinSpondin-like TSP1 domainDomainInterproscan
PF01363
all species →		FYVEFYVE zinc fingerDomainInterproscan
PF00415
all species →		RCC1Regulator of chromosome condensation (RCC1) repeatRepeatInterproscan
PF16457
all species →		PH_12Pleckstrin homology domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036383
all species →		Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR000884
all species →		RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR052065
all species →		FamilyComplement and asymmetry regulatorInterproscan
IPR044004
all species →		DomainSpondin-like TSP1 domainInterproscan
IPR000408
all species →		RepeatRegulator of chromosome condensation, RCC1Interproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR009091
all species →		Homologous_superfamilyRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIInterproscan
IPR017455
all species →		DomainZinc finger, FYVE-relatedInterproscan
IPR000306
all species →		DomainFYVE zinc fingerInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR001849
all species →		DomainPleckstrin homology domainInterproscan
IPR051210
all species →		FamilyUbiquitin ligases and GEF domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22906
all species →		PROPERDINInterproscan
PTHR22870
all species →		REGULATOR OF CHROMOSOME CONDENSATIONInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g1005.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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