Gene detail

Detailed information of g1007.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: KAJ7388128.1, Methionine aminopeptidase 1D, mitochondrial [Desmophyllum pertusum]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CPW9	Methionine aminopeptidase 1D, mitochondrial OS=Mus musculus OX=10090 GN=Metap1d PE=2 SV=1
Q6UB28	Methionine aminopeptidase 1D, mitochondrial OS=Homo sapiens OX=9606 GN=METAP1D PE=1 SV=1
Q4VBS4	Methionine aminopeptidase 1D, mitochondrial OS=Danio rerio OX=7955 GN=metap1d PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000046 (this species only)
Orthogroup (gene family)	OG0001340 (this species only)
Orthogroup (gene family)	OG0001404 (this species only)
Orthogroup (gene family)	OG0001690 (this species only)
Orthogroup (gene family)	OG0001924 (this species only)
Orthogroup (gene family)	OG0002129 (this species only)
Orthogroup (gene family)	OG0002573 (this species only)
Orthogroup (gene family)	OG0002693 (this species only)
Orthogroup (gene family)	OG0005917 (this species only)
Orthogroup (gene family)	OG0014099 (this species only)
Orthogroup (gene family)	OG0036194 (this species only)
Orthogroup (gene family)	OG0059793 (this species only)
Orthogroup (gene family)	OG0171635 (this species only)
Orthogroup (gene family)	OG0172220 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01522 all species →	Polysacc_deac_1	Polysaccharide deacetylase	Family	Interproscan
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan
PF01734 all species →	Patatin	Patatin-like phospholipase	Family	Interproscan
PF13843 all species →	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF00557 all species →	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan
PF00909 all species →	Ammonium_transp	Ammonium Transporter Family	Family	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF02824 all species →	TGS	TGS domain	Domain	Interproscan
PF16897 all species →	MMR_HSR1_Xtn	C-terminal region of MMR_HSR1 domain	Family	Interproscan
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011330 all species →	Homologous_superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Interproscan
IPR002509 all species →	Domain	NodB homology domain	Interproscan
IPR052740 all species →	Family	Carbohydrate Esterase 4	Interproscan
IPR016035 all species →	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR002641 all species →	Domain	Patatin-like phospholipase domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR052580 all species →	Family	Probable Lipid Hydrolase	Interproscan
IPR029526 all species →	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR036005 all species →	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR002467 all species →	Family	Peptidase M24A, methionine aminopeptidase, subfamily 1	Interproscan
IPR000994 all species →	Domain	Peptidase M24	Interproscan
IPR001714 all species →	Family	Peptidase M24, methionine aminopeptidase	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029020 all species →	Homologous_superfamily	Ammonium/urea transporter	Interproscan
IPR024041 all species →	Domain	Ammonium transporter AmtB-like domain	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR004095 all species →	Domain	TGS	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR012676 all species →	Homologous_superfamily	TGS-like	Interproscan
IPR031662 all species →	Domain	GTP binding protein, second domain	Interproscan
IPR045001 all species →	Family	Developmentally regulated GTP-binding protein	Interproscan
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR045316 all species →	Family	Zinc transporter Msc2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45985 all species →	-	Interproscan
PTHR46394 all species →	ANNEXIN	Interproscan
PTHR46599 all species →	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4	Interproscan
PTHR43330 all species →	METHIONINE AMINOPEPTIDASE	Interproscan
PTHR24115 all species →	KINESIN-RELATED	Interproscan
PTHR11730 all species →	AMMONIUM TRANSPORTER	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR43127 all species →	DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2	Interproscan
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan
PTHR45755 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0070006 all species →	Molecular Function	metalloaminopeptidase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005871 all species →	Cellular Component	kinesin complex	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008519 all species →	Molecular Function	ammonium channel activity	Interproscan
GO:0072488 all species →	Biological Process	ammonium transmembrane transport	Interproscan
GO:0097272 all species →	Biological Process	ammonium homeostasis	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006829 all species →	Biological Process	zinc ion transport	Interproscan
GO:0006882 all species →	Biological Process	intracellular zinc ion homeostasis	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0046873 all species →	Molecular Function	metal ion transmembrane transporter activity	Interproscan
GO:1904257 all species →	Biological Process	zinc ion import into Golgi lumen	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01265	map; methionyl aminopeptidase	EC:3.4.11.18	Peptidases and inhibitors	ko01002	deepkoala
K01513	ENPP1_3, CD203; ectonucleotide pyrophosphatase/phosphodiesterase family member 1/3	EC:3.1.4.1 EC:3.6.1.9	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala
K03320	amt, AMT, MEP; ammonium transporter, Amt family	-	Transporters	ko02000	deepkoala
K12835	DDX42, SF3B125; ATP-dependent RNA helicase DDX42	EC:5.6.2.7	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.